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Report for CCDS46376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46376.1 Public Homo sapiens 2 RFX8 24 110 108 CCDS HistoryNCBI Gene:731220Re-query CCDS DB by CCDS ID:46376.1Re-query CCDS DB by GeneID:731220See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428343.6 ENSP00000401536.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000428343.6Link to Ensembl Protein Viewer:ENSP00000401536.1Re-query CCDS DB by Nucleotide ID:ENST00000428343Re-query CCDS DB by Protein ID:ENSP00000401536
Original member Current member NCBI NM_001145664.2 NP_001139136.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145664.2Link to Protein Sequence:NP_001139136.2Re-query CCDS DB by Nucleotide ID:NM_001145664Re-query CCDS DB by Protein ID:NP_001139136Link to BLAST:NP_001139136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139136.2 473 Q6ZV50-3 473 100% 0 0

Chromosomal Locations for CCDS 46376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 101397548 101397724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101402436 101402752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101405943 101406057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101410619 101410713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101412915 101413071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101414854 101414912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101417534 101417684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101418851 101418964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101421724 101421777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101422362 101422472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101466777 101466848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGTATGAGATTTACGTGGAGACCTGTGGGCAAAACACTGAGAACCAAGTCAACCCGGCCACCTTTGGGA
AGTGTGAAGATCATTCACCGATGAAGACAGACCCAGTTGGATCCCCTTTGTCTGAATTCAGGAGATGTCC
ATTTCTGGAGCAAGAACAGGCAAAGAAATACTCCTGTAATATGATGGCCTTCCTTGCTGACGAATACTGC
AACTATTGTCGAGACATTTTACGAAATGTGGAGGACTTGCTTACTTCCTTCTGGAAGTCTCTGCAGCAAG
ACACAGTCATGCTGATGTCATTGCCTGACGTGTGCCAGCTCTTTAAATGCTACGACGTCCAGCTGTACAA
GGGAATTGAGGATGTTCTCCTTCATGACTTCTTGGAAGATGTTTCTATTCAGTACCTGAAATCTGTGCAG
TTATTTAGTAAGAAATTTAAGCTGTGGCTCCTTAATGCTTTGGAAGGTGTTCCAGCCCTCTTGCAGATCT
CCAAACTCAAAGAAGTTACTCTATTTGTCAAAAGACTAAGAAGAAAGACGTACCTTTCCAACATGGCTAA
GACTATGCGAATGGTATTGAAAAGTAAGAGGCGTGTCAGCGTTTTGAAGTCAGATCTACAGGCCATCATC
AATCAAGGCACTTTGGCTACTTCTAAGAAAGCCCTGGCAAGTGACCGGAGTGGCGCAGATGAACTGGAGA
ACAACCCAGAGATGAAATGTTTAAGAAACTTAATTTCTTTGCTGGGAACATCAACAGATCTCAGGGTATT
CCTCAGCTGTCTGTCTTCACATCTCCAAGCATTTGTGTTCCAGACAAGCAGAAGCAAAGAAGAGTTTACC
AAATTGGCCGCCAGCTTCCAGCTGAGATGGAATCTTCTTCTCACTGCTGTAAGCAAAGCCATGACCCTCT
GCCACAGAGATAGTTTTGGCTCCTGGCATCTGTTTCACTTGTTGCTTTTGGAATATATGATTCATATACT
TCAGTCATGCCTAGAGGAGGAAGAGGAGGAGGAGGACATGGGGACTGTCAAGGAAATGCTACCAGATGAC
CCGACTCTCGGCCAGCCAGACCAGGCACTTTTCCATTCTCTGAATTCCTCACTGTCGCAGGCGTGTGCCA
GCCCCAGCATGGAGCCACTGGGGGTGATGCCCACACACATGGGCCAGGGCCGATATCCCGTGGGTGTGAG
CAACATGGTCCTCAGGATCCTGGGCTTCCTGGTGGACACTGCCATGGGCAATAAGCTCATCCAGGTGCTG
TTGGAAGATGAAACCACTGAAAGCGCAGTTAAACTCAGCCTTCCTATGGGACAAGAAGCCCTCATAACCC
TAAAAGATGGACAACAATTTGTGATTCAGATATCAGATGTACCCCAAAGCTCTGAAGATATTTATTTCAG
AGAAAACAATGCTAATGTGTGA

Translation (473 aa):
MYEIYVETCGQNTENQVNPATFGKCEDHSPMKTDPVGSPLSEFRRCPFLEQEQAKKYSCNMMAFLADEYC
NYCRDILRNVEDLLTSFWKSLQQDTVMLMSLPDVCQLFKCYDVQLYKGIEDVLLHDFLEDVSIQYLKSVQ
LFSKKFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSNMAKTMRMVLKSKRRVSVLKSDLQAII
NQGTLATSKKALASDRSGADELENNPEMKCLRNLISLLGTSTDLRVFLSCLSSHLQAFVFQTSRSKEEFT
KLAASFQLRWNLLLTAVSKAMTLCHRDSFGSWHLFHLLLLEYMIHILQSCLEEEEEEEDMGTVKEMLPDD
PTLGQPDQALFHSLNSSLSQACASPSMEPLGVMPTHMGQGRYPVGVSNMVLRILGFLVDTAMGNKLIQVL
LEDETTESAVKLSLPMGQEALITLKDGQQFVIQISDVPQSSEDIYFRENNANV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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