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Report for CCDS46393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46393.1 Public Homo sapiens 2 ZC3H6 24 110 108 CCDS HistoryNCBI Gene:376940Re-query CCDS DB by CCDS ID:46393.1Re-query CCDS DB by GeneID:376940See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409871.6 ENSP00000386764.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409871.6Link to Ensembl Protein Viewer:ENSP00000386764.1Re-query CCDS DB by Nucleotide ID:ENST00000409871Re-query CCDS DB by Protein ID:ENSP00000386764
Original member Current member NCBI NM_198581.3 NP_940983.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198581.3Link to Protein Sequence:NP_940983.2Re-query CCDS DB by Nucleotide ID:NM_198581Re-query CCDS DB by Protein ID:NP_940983Link to BLAST:NP_940983.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940983.2 1189 P61129 1189 100% 0 0

Chromosomal Locations for CCDS 46393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112275995 112276026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112299849 112300029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112303229 112303351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112309885 112310161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112311804 112311937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112316470 112316586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112317221 112317332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112321756 112321865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112322649 112322902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112324152 112324663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112324964 112325197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112331005 112332488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3570 nt):
ATGACAGACTCTGAACATGCAGGGCACGACAGAGAAGATGGCGAATTAGAAGATGGTGAAATAGACGATG
CAGGATTTGAAGAAATACAAGAAAAAGAAGCAAAAGAGAATGAAAAGCAGAAAAGTGAGAAAGCCTACAG
AAAATCAAGAAAAAAACATAAGAAAGAGAGAGAGAAGAAAAAATCCAAAAGGAGAAAACGTGAGAAACAT
AAGCATAATTCCCCATCTAGTGATGATAGTTCGGACTACAGCCTTGATTCAGATGTTGAACATACAGAAA
GTTCCCATAAAAAAAGAACTGGTTTCTACAGGGATTATGACATTCCATTTACTCAGCGTGGACATATATC
AGGAAGCTACATAACATCAAAGAAGGGTCAACATAACAAAAAATTTAAAAGTAAAGAATATGATGAGTAC
AGCACCTACAGTGATGACAACTTCGGTAACTACAGTGATGACAACTTTGGTAACTACGGTCAGGAAACAG
AGGAAGATTTTGCCAATCAGCTGAAACAATACAGGCAAGCTAAAGAAACCTCAAATATTGCTTTAGGGTC
ATCATTTTCTAAAGAATCAGGAAAAAAACAGAGAATGAAAGGAGTTCAGCAAGGTATTGAACAGAGAGTT
AAAAGTTTTAATGTTGGTCGTGGACGTGGCTTGCCGAAGAAAATCAAACGAAAAGAACGTGGGGGAAGAA
CCAATAAAGGGCCTAATGTGTTTTCAGTATCGGATGACTTTCAAGAGTATAATAAACCAGGGAAAAAATG
GAAGGTTATGACTCAGGAATTTATTAATCAGCACACAGTGGAACACAAAGGAAAACAAATCTGTAAATAC
TTCCTGGAAGGGAGGTGTATTAAGGGAGATCAGTGTAAATTTGATCATGATGCAGAGTTGGAGAAAAGAA
AAGAGATCTGCAAATTTTATTTACAAGGATATTGTACCAAAGGAGAGAACTGCATTTATATGCATAATGA
ATTTCCATGCAAGTTCTATCATAGTGGAGCAAAATGTTACCAGGGAGACAACTGTAAATTTTCCCATGAT
GATCTAACTAAAGAAACAAAGAAACTTTTGGACAAAGTGTTGAATACTGATGAAGAACTCATAAATGAAG
ATGAAAGAGAATTAGAGGAACTTAGAAAGCGTGGCATAACTCCTCTTCCCAAACCACCTCCAGGGGTTGG
GCTTCTGCCAACCCCTCCAGAGCATTTTCCCTTTTCTGATCCTGAAGACGATTTTCAGACAGATTTCTCT
GATGATTTTAGGAAAATTCCATCTCTTTTTGAAATAGTTGTAAAACCTACTGTGGATTTAGCGCATAAAA
TTGGGAGGAAGCCACCAGCATTTTATACCAGTGCCTCACCACCAGGACCACAATTTCAGGGAAGCAGTCC
ACACCCTCAACATATCTATAGTTCTGGGTCAAGTCCAGGTCCTGGACCTAACATGTCTCAGGGACACAGT
AGTCCTGTGATGCACCCAGGCTCCCCTGGACATCACCCATGTGCAGGACCTCCTGGTCTACCAGTGCCAC
AGAGCCCACCTTTACCACCTGGTCCACCTGAAATTGTAGGTCCTCAAAATCAAGCTGGAGTGCTTGTTCA
ACCAGACACATCTTTGACACCACCAAGTATGGGTGGGGCTTACCACTCCCCAGGCTTTCCAGGACATGTG
ATGAAAGTACCCAGAGAGAATCACTGTTCTCCAGGTTCATCATACCAGCAAAGTCCTGGTGAAATGCAGC
TCAACACCAATTATGAGTCCCTGCAAAACCCAGCTGAGTTTTACGATAATTACTATGCACAGCATTCTAT
ACATAATTTTCAGCCACCCAATAACTCTGGTGATGGGATGTGGCATGGTGAATTTGCCCAGCAGCAGCCT
CCTGTTGTTCAAGACTCACCTAACCATGGGAGTGGGTCTGATGGCAGCAGCACTAGGACAGGCCATGGCC
CTCTGCCTGTACCAGGCCTCCTCCCTGCAGTGCAAAGAGCTCTTTTTGTAAGACTTACTCAGAGATACCA
AGAAGATGAAGAACAAACCAGCACCCAACCTCATAGGGCACCAAGCAAGGAAGAAGATGATACAGTTAAC
TGGTATTCCAGTAGTGAAGAGGAAGAAGGAAGCAGTGTCAAATCAATACTGAAAACATTACAGAAACAAA
CAGAAACTTTAAGGAATCAGCAACAACCTTCCACAGAACTCAGCACTCCTACTGATCCAAGACTTGCTAA
AGAGAAAAGTAAAGGAAACCAAGTGGTTGACCCTAGGCTTAGGACTATCCCAAGGCAAGACATTAGAAAG
CCTTCTGAGTCTGCCCCACTGGATCTTAGACTTGCGTGGGATCCCAGGAAATTGAGAGGGAATGGAAGTG
GTCACATAGGCTCTTCTGTTGGTGGAGCAAAGTTTGATTTGCATCATGCAAATGCTGGCACTAATGTCAA
ACACAAAAGAGGCGATGATGATGATGAAGATACAGAAAGAGAACTGAGAGAAAAAGCTTTCTTAATACCT
TTGGATGCCTCACCTGGCATAATGCTCCAGGATCCAAGGTCACAATTGAGACAGTTCAGTCACATTAAAA
TGGACATTACTCTAACCAAACCCAACTTTGCAAAACACATCGTGTGGGCTCCCGAAGACTTACTTCCAGT
ACCTTTACCTAAACCTGATCCAGTGTCTTCAATCAATTTACCTCTGCCCCCACTTATAGCTGACCAGAGG
CTAAATAGATTATGGAATACAAAAAGTGATCTTCATCAAAATACAGTGTCCATTGATCCAAAATTAGCAG
CCAAAGCCAAAATTAACACAACAAACAGAGAAGGCTACCTAGAACAATTTGGAGACTCACACGGTTCAGG
AGCTAAATTAGGAGATCCTAGACTACAAAAAAATTTTGATCCTAGGCTTCACAGACTGCCCAATACAGAG
TCTCATCAAGTGGTTATGAAGGATTCACATGCATCAAAGGGTGCCCCTCACTTACCCAGATCAAACCCTG
GTTCATCACAGCCCTCAGGGGCAGGAACTAGCAATTCTGGTTCCGGGGCTCTGCCTCCATATGCCCCTAA
ACTCTCTTCCTCAGCTGGCCTTCCACTGGGAACTTCCACTTCAGTTCTTAGTGGTATTAGTTTGTATGAC
CCTAGGGATCACGGTTCATCATCCACATCAGAGCTAGCAACAGCTTCTTCAGGAGAAAACTCAAAGAACC
AGAAAAAAAGTGGTGGCTTAAAAAGTAGTGACAAAACTGAACCTTCTCCTGGAGAAGCCATCCTTCCACA
AAAACCCAGTCCAAACGTGGGAGTCACTCTTGAGGGGCCAGCTGACCCACAGGCGGACGTTCCCAGGAGT
TCTGGTAAGGTTCAGGTCCCAGCAGTGCACAGCCTTCCTGTTCAGGCATTAACAGGCTTAATTAGGCCAC
AGTACAGTGATCCAAGGCAGGCAAGGCAGCCAGGACAGGGGAGCCCGACCCCAGATAATGATCCCGGTAG
AGAAACAGATGACAAATCTCTGAAAGAGGTTTTTAAAACTTTTGATCCAACTGCTTCACCATTTTGTTAG

Translation (1189 aa):
MTDSEHAGHDREDGELEDGEIDDAGFEEIQEKEAKENEKQKSEKAYRKSRKKHKKEREKKKSKRRKREKH
KHNSPSSDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPFTQRGHISGSYITSKKGQHNKKFKSKEYDEY
STYSDDNFGNYSDDNFGNYGQETEEDFANQLKQYRQAKETSNIALGSSFSKESGKKQRMKGVQQGIEQRV
KSFNVGRGRGLPKKIKRKERGGRTNKGPNVFSVSDDFQEYNKPGKKWKVMTQEFINQHTVEHKGKQICKY
FLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHD
DLTKETKKLLDKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFS
DDFRKIPSLFEIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHS
SPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHV
MKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQPPNNSGDGMWHGEFAQQQP
PVVQDSPNHGSGSDGSSTRTGHGPLPVPGLLPAVQRALFVRLTQRYQEDEEQTSTQPHRAPSKEEDDTVN
WYSSSEEEEGSSVKSILKTLQKQTETLRNQQQPSTELSTPTDPRLAKEKSKGNQVVDPRLRTIPRQDIRK
PSESAPLDLRLAWDPRKLRGNGSGHIGSSVGGAKFDLHHANAGTNVKHKRGDDDDEDTERELREKAFLIP
LDASPGIMLQDPRSQLRQFSHIKMDITLTKPNFAKHIVWAPEDLLPVPLPKPDPVSSINLPLPPLIADQR
LNRLWNTKSDLHQNTVSIDPKLAAKAKINTTNREGYLEQFGDSHGSGAKLGDPRLQKNFDPRLHRLPNTE
SHQVVMKDSHASKGAPHLPRSNPGSSQPSGAGTSNSGSGALPPYAPKLSSSAGLPLGTSTSVLSGISLYD
PRDHGSSSTSELATASSGENSKNQKKSGGLKSSDKTEPSPGEAILPQKPSPNVGVTLEGPADPQADVPRS
SGKVQVPAVHSLPVQALTGLIRPQYSDPRQARQPGQGSPTPDNDPGRETDDKSLKEVFKTFDPTASPFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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