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Report for CCDS46401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46401.1 Public Homo sapiens 2 CNTNAP5 24 110 108 CCDS HistoryNCBI Gene:129684Re-query CCDS DB by CCDS ID:46401.1Re-query CCDS DB by GeneID:129684See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431078.1 ENSP00000399013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431078.1Link to Ensembl Protein Viewer:ENSP00000399013.1Re-query CCDS DB by Nucleotide ID:ENST00000431078Re-query CCDS DB by Protein ID:ENSP00000399013
Original member Current member NCBI NM_130773.4 NP_570129.1 Accepted alive Link to Nucleotide Sequence:NM_130773.4Link to Protein Sequence:NP_570129.1Re-query CCDS DB by Nucleotide ID:NM_130773Re-query CCDS DB by Protein ID:NP_570129Link to BLAST:NP_570129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570129.1 1306 Q8WYK1 1306 100% 0 0

Chromosomal Locations for CCDS 46401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 124025651 124025732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124221705 124221809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124242200 124242393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124417443 124417590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124434484 124434687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124446753 124446937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124474739 124474879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124504292 124504556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124524303 124524452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124527285 124527456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124563217 124563323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124609801 124609920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124647758 124647958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124747229 124747385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124763672 124763799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124763977 124764147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124772799 124773017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124789902 124790141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124798096 124798320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124865306 124865436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124869675 124869762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124902882 124903100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124911467 124911538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 124914092 124914288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3921 nt):
ATGGATTCTTTACCACGGCTGACCAGCGTTTTGACTTTGCTGTTCTCTGGCTTGTGGCATTTAGGATTAA
CAGCGACAAACTACAACTGTGATGATCCACTAGCATCCCTGCTCTCTCCAATGGCTTTTTCCAGTTCCTC
AGACCTCACTGGCACTCACAGCCCAGCTCAACTCAACTGGAGAGTTGGAACTGGCGGTTGGTCCCCAGCA
GATTCCAATGCTCAACAGTGGCTCCAGATGGACCTGGGAAACAGAGTAGAGATTACAGCAGTGGCCACGC
AGGGAAGATACGGAAGCTCTGACTGGGTGACGAGTTACAGCCTGATGTTCAGTGACACAGGACGCAACTG
GAAACAGTACAAACAAGAAGACAGCATCTGGACCTTTGCAGGAAACATGAATGCTGACAGCGTGGTGCAC
CACAAGCTATTGCACTCAGTGAGAGCCCGATTTGTTCGCTTTGTGCCCCTGGAATGGAATCCCAGTGGGA
AGATTGGCATGAGAGTCGAGGTCTACGGATGTTCCTATAAATCAGATGTTGCTGACTTTGATGGCCGAAG
CTCACTTCTGTACAGGTTCAATCAGAAGTTGATGAGTACTCTCAAAGATGTGATCTCCCTGAAGTTCAAG
AGCATGCAAGGAGATGGGGTCCTGTTCCATGGAGAAGGTCAGCGTGGAGACCACATCACCTTGGAACTCC
AGAAGGGGAGGCTCGCCCTACACCTCAATTTGGGTGACAGCAAAGCGCGGCTCAGCAGCAGCTTGCCCTC
TGCCACCCTGGGCAGCCTCCTGGATGACCAGCACTGGCACTCGGTCCTCATTGAGCGGGTGGGCAAGCAG
GTGAACTTCACGGTGGACAAGCACACACAGCACTTCCGCACCAAGGGCGAGACGGATGCCTTAGACATTG
ACTATGAGCTTAGTTTTGGAGGAATTCCAGTACCAGGAAAACCTGGGACCTTTTTAAAGAAAAACTTCCA
TGGATGCATCGAAAACCTTTACTACAATGGAGTAAACATAATTGACCTGGCTAAGAGACGAAAGCATCAG
ATCTATACTGGCAATGTCACTTTTTCCTGCTCCGAACCACAGATTGTGCCCATCACATTTGTCAACTCCA
GCGGCAGCTATTTGCTGCTGCCCGGCACCCCCCAAATTGATGGGCTCTCAGTGAGTTTCCAGTTTCGAAC
ATGGAACAAGGATGGTCTGCTTCTGTCCACAGAGCTGTCTGAGGGCTCGGGAACCCTGCTGCTGAGCCTG
GAGGGTGGAATCCTGAGACTCGTGATTCAGAAAATGACAGAACGCGTAGCTGAAATCCTCACAGGCAGCA
ACTTGAATGATGGCCTGTGGCACTCGGTTAGCATCAACGCCAGGAGGAACCGCATCACGCTCACTCTGGA
TGATGAAGCAGCACCCCCGGCTCCAGACAGCACTTGGGTGCAGATTTATTCTGGAAATAGCTACTATTTT
GGAGGGTGCCCCGACAATCTCACCGATTCCCAATGTTTAAATCCCATTAAGGCTTTCCAAGGCTGCATGA
GGCTCATCTTTATTGATAACCAGCCCAAGGACCTCATTTCAGTTCAGCAAGGTTCCCTGGGGAATTTTAG
TGATTTACACATTGATCTGTGTAGCATCAAAGACAGGTGTTTGCCAAACTACTGTGAACATGGAGGAAGC
TGCTCCCAGTCCTGGACTACCTTCTATTGTAACTGCAGTGACACAAGTTACACTGGTGCCACCTGCCACA
ACTCCATCTACGAGCAATCCTGCGAGGTGTACAGGCACCAGGGGAATACAGCCGGCTTCTTCTACATCGA
CTCAGATGGCAGCGGCCCACTGGGACCTCTCCAGGTGTACTGCAATATCACTGAGGACAAGATCTGGACA
TCAGTGCAGCACAACAATACAGAGCTGACCCGAGTGCGGGGCGCTAACCCTGAGAAGCCCTATGCCATGG
CCTTGGACTACGGGGGCAGCATGGAACAGCTGGAGGCCGTGATCGACGGCTCTGAGCACTGTGAGCAGGA
GGTGGCCTACCACTGCAGGAGGTCCCGCCTGCTCAACACGCCGGATGGAACACCATTTACCTGGTGGATT
GGGCGGTCCAATGAAAGGCACCCTTACTGGGGAGGTTCCCCTCCTGGGGTCCAGCAGTGTGAGTGTGGCC
TAGACGAGAGCTGCCTGGACATTCAGCACTTTTGCAATTGCGACGCTGACAAGGATGAATGGACAAATGA
TACTGGCTTTCTTTCCTTCAAAGACCACTTGCCTGTCACTCAGATAGTTATCACTGATACCGACAGATCA
AACTCAGAAGCCGCTTGGAGAATTGGTCCCTTGCGTTGCTATGGTGACCGACGCTTCTGGAACGCCGTCT
CATTTTATACAGAAGCCTCTTACCTCCACTTTCCTACCTTCCATGCGGAATTCAGTGCCGATATTTCCTT
CTTTTTTAAAACCACAGCATTATCCGGAGTTTTCCTAGAAAATCTTGGCATTAAAGACTTCATTCGACTC
GAAATAAGCTCTCCTTCAGAGATCACCTTTGCCATCGATGTTGGGAATGGTCCTGTGGAGCTTGTAGTCC
AGTCTCCTTCTCTTCTGAATGACAACCAATGGCACTATGTCCGGGCTGAGAGGAACCTCAAGGAGACCTC
CCTGCAGGTGGACAACCTTCCAAGGAGCACCAGGGAGACGTCGGAGGAGGGCCATTTTCGACTGCAGCTG
AACAGCCAGTTGTTTGTAGGGGGAACGTCATCCAGACAGAAAGGCTTCCTAGGATGCATTCGCTCCTTAC
ACTTGAATGGACAGAAAATGGACCTGGAAGAGAGGGCAAAGGTCACATCTGGAGTCAGGCCAGGCTGCCC
CGGCCACTGCAGCAGCTACGGCAGCATCTGCCACAACGGGGGCAAGTGTGTGGAGAAGCACAATGGCTAC
CTGTGTGATTGCACCAATTCACCTTATGAAGGGCCCTTTTGCAAAAAAGAGGTTTCTGCTGTTTTTGAGG
CTGGCACGTCGGTTACTTACATGTTTCAAGAACCCTATCCTGTGACCAAGAATATAAGCCTCTCATCCTC
AGCTATTTACACAGATTCAGCTCCATCCAAGGAAAACATTGCACTTAGCTTTGTGACAACCCAGGCACCC
AGTCTTTTGCTCTTTATCAATTCTTCTTCTCAGGACTTCGTGGTTGTTCTGCTCTGCAAGAATGGAAGCT
TACAGGTTCGCTATCACCTAAACAAGGAAGAAACCCATGTATTCACCATTGATGCAGATAACTTTGCTAA
CAGAAGGATGCACCACTTGAAGATTAACCGAGAGGGAAGAGAGCTTACCATTCAGATGGACCAGCAACTT
CGACTCAGTTATAACTTCTCTCCGGAAGTAGAGTTCAGGGTTATAAGGTCACTCACCTTGGGCAAAGTCA
CAGAGAATCTTGGTTTGGATTCTGAAGTTGCTAAAGCAAATGCCATGGGTTTTGCTGGATGCATGTCTTC
CGTCCAGTACAACCACATAGCACCACTGAAGGCTGCCCTGCGCCATGCCACTGTCGCGCCTGTGACTGTC
CATGGGACCTTGACGGAATCCAGCTGTGGCTTCATGGTGGACTCAGATGTGAATGCAGTGACCACGGTGC
ATTCTTCATCAGATCCTTTTGGGAAGACAGATGAGCGGGAACCACTCACAAATGCTGTTCGAAGTGATTC
GGCAGTCATCGGAGGGGTGATAGCAGTGGTGATATTCATCATCTTCTGTATCATCGGCATCATGACCCGG
TTCCTCTACCAGCACAAGCAGTCACATCGTACGAGCCAGATGAAGGAGAAGGAATATCCAGAAAATTTGG
ACAGTTCCTTCAGAAATGAAATTGACTTGCAAAACACAGTGAGCGAGTGTAAACGGGAATATTTCATCTG
A

Translation (1306 aa):
MDSLPRLTSVLTLLFSGLWHLGLTATNYNCDDPLASLLSPMAFSSSSDLTGTHSPAQLNWRVGTGGWSPA
DSNAQQWLQMDLGNRVEITAVATQGRYGSSDWVTSYSLMFSDTGRNWKQYKQEDSIWTFAGNMNADSVVH
HKLLHSVRARFVRFVPLEWNPSGKIGMRVEVYGCSYKSDVADFDGRSSLLYRFNQKLMSTLKDVISLKFK
SMQGDGVLFHGEGQRGDHITLELQKGRLALHLNLGDSKARLSSSLPSATLGSLLDDQHWHSVLIERVGKQ
VNFTVDKHTQHFRTKGETDALDIDYELSFGGIPVPGKPGTFLKKNFHGCIENLYYNGVNIIDLAKRRKHQ
IYTGNVTFSCSEPQIVPITFVNSSGSYLLLPGTPQIDGLSVSFQFRTWNKDGLLLSTELSEGSGTLLLSL
EGGILRLVIQKMTERVAEILTGSNLNDGLWHSVSINARRNRITLTLDDEAAPPAPDSTWVQIYSGNSYYF
GGCPDNLTDSQCLNPIKAFQGCMRLIFIDNQPKDLISVQQGSLGNFSDLHIDLCSIKDRCLPNYCEHGGS
CSQSWTTFYCNCSDTSYTGATCHNSIYEQSCEVYRHQGNTAGFFYIDSDGSGPLGPLQVYCNITEDKIWT
SVQHNNTELTRVRGANPEKPYAMALDYGGSMEQLEAVIDGSEHCEQEVAYHCRRSRLLNTPDGTPFTWWI
GRSNERHPYWGGSPPGVQQCECGLDESCLDIQHFCNCDADKDEWTNDTGFLSFKDHLPVTQIVITDTDRS
NSEAAWRIGPLRCYGDRRFWNAVSFYTEASYLHFPTFHAEFSADISFFFKTTALSGVFLENLGIKDFIRL
EISSPSEITFAIDVGNGPVELVVQSPSLLNDNQWHYVRAERNLKETSLQVDNLPRSTRETSEEGHFRLQL
NSQLFVGGTSSRQKGFLGCIRSLHLNGQKMDLEERAKVTSGVRPGCPGHCSSYGSICHNGGKCVEKHNGY
LCDCTNSPYEGPFCKKEVSAVFEAGTSVTYMFQEPYPVTKNISLSSSAIYTDSAPSKENIALSFVTTQAP
SLLLFINSSSQDFVVVLLCKNGSLQVRYHLNKEETHVFTIDADNFANRRMHHLKINREGRELTIQMDQQL
RLSYNFSPEVEFRVIRSLTLGKVTENLGLDSEVAKANAMGFAGCMSSVQYNHIAPLKAALRHATVAPVTV
HGTLTESSCGFMVDSDVNAVTTVHSSSDPFGKTDEREPLTNAVRSDSAVIGGVIAVVIFIIFCIIGIMTR
FLYQHKQSHRTSQMKEKEYPENLDSSFRNEIDLQNTVSECKREYFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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