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Report for CCDS46417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46417.1 Public Homo sapiens 2 NCKAP5 24 110 108 CCDS HistoryNCBI Gene:344148Re-query CCDS DB by CCDS ID:46417.1Re-query CCDS DB by GeneID:344148See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409213.5 ENSP00000386952.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409213.5Link to Ensembl Protein Viewer:ENSP00000386952.1Re-query CCDS DB by Nucleotide ID:ENST00000409213Re-query CCDS DB by Protein ID:ENSP00000386952
Original member Current member NCBI NM_207481.4 NP_997364.3 Accepted alive Link to Nucleotide Sequence:NM_207481.4Link to Protein Sequence:NP_997364.3Re-query CCDS DB by Nucleotide ID:NM_207481Re-query CCDS DB by Protein ID:NP_997364Link to BLAST:NP_997364.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997364.3 590 O14513-2 590 100% 0 0

Chromosomal Locations for CCDS 46417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132673289 132673305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132725627 132725759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132728816 132728952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132731737 132732051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132773816 132773894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132790023 132790205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132796628 132796729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132860492 132860611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132868936 132868974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132878848 132878916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132963720 132963869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132994152 132994239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 133129978 133130111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 133213716 133213779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 133303037 133303110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 133517458 133517526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGAGGGAAAGAGACAGCTTGAGAAAAGGGACTTTGGAAAAAGGCTGTCTCTAGACAGCAGTCTTGTGG
AATACATGGACTCCAATAAATACATTGAGCATCTGCTGACTCAGCTTGAGGAGCAACACAGGAGTCTCTG
GAGGGAGAAGTTGGCAGTGGCCCGACTACAGCGAGAAGTTGCCCAAAGAACAAGTGAGGGGGCCATGCAT
GAGAAGCTGATACATGAACTGGAAGAGGAGAGACACTTACGTCTTCAAAGCGAGAAGCGGTTGCAGGAGG
TGACCCTAGAGTCTGAACGCAACAGAATTCAGATGCGTAGCTTGCAGCAGCAGTTCTCCAGGATGGAAGA
AACAGTACGAAATCTATTGCAGAGTCAAGGATCTCCAGAGCAGAAAAAAGAAGAAACTGTTAATATAATG
GTCTATCAGGAAAAGCTGTCAGAGGAAGAGAGAAAACATAAGGAAGCTTTGGAAGATCTTCACATGGTGG
TTGATGAGGATTCGAGGAGTGAAAGCAGCAGTACAGATGAGGGAAAAGAAAAGACCAAATTGCTATTAGA
GAGATTGAAAGCTCTAGAGGCAGAGAATTCAGCGTTGGCTTTGGAGAATGAAAATCAAAGGGAACAATAT
GAGCGATGTCTTGATGAGGTAGCCAACCAAGTTGTTCAAGCTCTGCTTACTCAAAAGGATCTAAGAGAGG
AATGTGTGAAGTTGAAAACAAGAGTGTTTGATTTGGAACAGCAGAATCGAACACTAAGCATCCTATTCCA
ACAGCGAGTCAGACCCACTTCTGATCTGCTCCTCCAGAAACTTCACTCACGTCTCTTGGATCTTTCATCT
GGAGATTTGCTTTCAGAGGTGGAAAGAAACCGAAGTCTGACACAGTCACGAACTGATGCTGAGGTGCACG
AACACCAACTAAATACAAAATCGGCCTTGAAATGCCCTGGCTTGGGGGCTGTCATCCCTGGTCATCTCTG
TCCTCGAAACAGCTACAGTAGCAGCAGTGAACTGTCTCTTTCAAGCACCTGCAGCGAGTACTCCAGTGGC
TCCTCCTACACGTGGCACGATGGGAAGAACCTCAGGAAAAGGGTAAAAGAGGCAAATGAAAACTTGCAAG
AGGATGAAGACGATGCAGTTGCAGATTCTGTATTTCAGAGCCACATCATAGAATCCAACTGCCAGATGAG
AACATTGGACAGTGGGATCGGAACCTTTCCACTCCCAGACTCGGGAAATCGCTCGACAGGACGCTACCTA
TGCCAGCCAGACTCCCCAGAGGACGCTGAGCCTCTCCTGCCTCTCCAGTCAGCCCTTTCTGCAGTTTCTT
CCATGAGAGCCCAAACCCTTGAACGTGAAGTGCCTTCCTCCACAGACGGCCAGCGCCCTGCAGATAGCGC
CATTGTTCATTCCACATCCGACCCCATCATGACCGCCAGAGGGATGAGGCCTCTTCAGAGCCGCCTCCCC
AAACCAGCTTCCTCAGGAAAAGTCAGTTCCCAAAAGCAGAATGAAGCAGAGCCAAGGCCTCAGACATGCT
CATCATTCGGATATGCTGAAGACCCAATGGCAAGCCAGCCGCTTCCAGACTGGGGGAGTGAAGTTGCTGC
CACCGGGACCCAGGACAAGGCACCCAGAATGTGTACGTACTCTGCCAGCGGTGGCAGTAATAGTGACAGT
GACCTGGACTATGGAGATAATGGTTTTGGAGCTGGAAGGGGACAGTTAGTGAAAGCACTGAAGAGCGCTG
CCCCAGAAATTGAGACAACTTGA

Translation (590 aa):
MEGKRQLEKRDFGKRLSLDSSLVEYMDSNKYIEHLLTQLEEQHRSLWREKLAVARLQREVAQRTSEGAMH
EKLIHELEEERHLRLQSEKRLQEVTLESERNRIQMRSLQQQFSRMEETVRNLLQSQGSPEQKKEETVNIM
VYQEKLSEEERKHKEALEDLHMVVDEDSRSESSSTDEGKEKTKLLLERLKALEAENSALALENENQREQY
ERCLDEVANQVVQALLTQKDLREECVKLKTRVFDLEQQNRTLSILFQQRVRPTSDLLLQKLHSRLLDLSS
GDLLSEVERNRSLTQSRTDAEVHEHQLNTKSALKCPGLGAVIPGHLCPRNSYSSSSELSLSSTCSEYSSG
SSYTWHDGKNLRKRVKEANENLQEDEDDAVADSVFQSHIIESNCQMRTLDSGIGTFPLPDSGNRSTGRYL
CQPDSPEDAEPLLPLQSALSAVSSMRAQTLEREVPSSTDGQRPADSAIVHSTSDPIMTARGMRPLQSRLP
KPASSGKVSSQKQNEAEPRPQTCSSFGYAEDPMASQPLPDWGSEVAATGTQDKAPRMCTYSASGGSNSDS
DLDYGDNGFGAGRGQLVKALKSAAPEIETT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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