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Report for CCDS46445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46445.1 Public Homo sapiens 2 CFAP210 24 110 108 CCDS HistoryNCBI Gene:129881Re-query CCDS DB by CCDS ID:46445.1Re-query CCDS DB by GeneID:129881See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447353.6 ENSP00000391504.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447353.6Link to Ensembl Protein Viewer:ENSP00000391504.1Re-query CCDS DB by Nucleotide ID:ENST00000447353Re-query CCDS DB by Protein ID:ENSP00000391504
Original member Current member NCBI NM_001085447.2 NP_001078916.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085447.2Link to Protein Sequence:NP_001078916.1Re-query CCDS DB by Nucleotide ID:NM_001085447Re-query CCDS DB by Protein ID:NP_001078916Link to BLAST:NP_001078916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078916.1 552 Q0VFZ6 552 100% 0 0

Chromosomal Locations for CCDS 46445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 169645841 169646182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169649182 169649346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169650329 169650521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169654075 169654214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169662280 169662436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169674576 169674769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169674867 169675040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169681007 169681233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169694261 169694327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGACACCTCGTCAGAGATGCTGGTACGGTTTGGACGGCGCTGTGGACGGGCGAAGGAAAGTACAGAAA
TA
AGAAACTCTGAAGAAGATCAAGTTCTCTATCTGCCTCTTCTACCTAGCAAAGTAGATCTCCAGCAGGT
C
ACCATAATTCCACACGATGAGTGGAAAAGGATTCAAGATAGCCTTGACAGGTTGACAAGAGAAGCAGCA
TGC
CTCCGTGCAGAAAGAAAGGCAAAGAAAGAAATGCATTTGCGATCTCAAGAAGTGGTAAAACACTGGA
CT
AATACATATGCAGGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAGGC
A
GAAAGACAAATTCTTGATCTGGAAGAAGAAATATACAAACAAGGAAAAAGAAAAAAGGCCATTGAAAAT
GCA
AAGCAATATCAATTTTACCAGACAGAAAGAGTGAAAAACTTTCATTCGGGACTTCTTCTTAGTAGAG
TT
ATGAAAGAACGTGATGCCCAGATTGAATTCCGAAAGAGTAAGATAAAATCAGATAAAAAATGGGAGGA
A
CAGTTGAAACTCAACATTGAAAAAGCTTTTAAAGAAGAACAAGAAAAAGCAGAAAAACGACACAGAGAA
AGG
GTGGCTCTTGCCAAAGATCATCTAAAACAAATAAAGGAACATGAGGAAGAAGAGGAAAGAAGGAAAA
AA
TATGAAGAAAAAGATGCTGAGGAAATAAAGCGACAGAATGCATTATATGAAATTGAAATGAGAAAAAA
A
CTAGAAAAGAAAAGAGAAGAGATGCATGAAAGCAGGAGACGGTTTCTTGAACATATGCAGGATAAACAT
ATT
ATCAAAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGATGAAAAGATGAGAAAATTCATCAAAGCAA
AA
AAGCGTCTTATACAAATGGGGAAAGAAAAAGAGGCTGAAACACACAGGCTTATGGAGAAACGAAGAGA
A
AGAATACATAACTTCCTGAGTGAACTGTTGAAAGAGAAACTTGACAATGAAGATATGATTATTGCTAGA
GAT
ATTGCAGAAGCTGAGGCTGAATGGGAAAAAAGAGAAAGAGAAAAAGATGAAAAAAACAAAGCAGAAT
TA
AAAACAATTGCAGAATATCGAGCCATTGTGATGAAAAATAAAGAGGAAGAAGAAAGACAAAGAAAAAT
A
GAGGCTAAAGAACAATTGCTGGCTGTCATGAAAGCAGATCAGATTTTCTGGGAACATGAAAAGGAGAAA
AAA
TGCAAAGCTGATAAAGAACATCAAGAGGTTCAAGATGCCCATATTCAGCAAATGGCCAAAAATAAGT
TT
AATGCAAAGCAAGCAAAACAAGCAGAATTAGATTATTGCAGACTTACTGAAGCTCTTGTGGCTGAAAA
G
GAGAAAGAATTTCAGGACTATGCCAGAGAGGTAATTGAACTTGAATCGGAAACAACAAATAAATATATT
TAC
CCTCTTGTAAAAGCTGTACAGGAAGGACCTGGAGGTGGCCGTGGACCAGTGTTTGTGGACAGAGGTG
GA
TTAAGACCCAGCTATCAGGCAAATGATGTTACTGGAGTCCAGCTCCCTTTTTATAACTCTCAGGGACC
A
AAATATAATTTTCAAAAGTCAAAGAGAAGGCTAGGTTTTACATGGTAG


Translation (552 aa):
MDTSSEMLVRFGRRCGRAKESTEIRNSEEDQVLYLPLLPSKVDLQQVTIIPHDEWKRIQDSLDRLTREAA
C
LRAERKAKKEMHLRSQEVVKHWTNTYA
GMKEQKLEAKKKRDEEIEAERQILDLEEEIYKQGKRKKAIEN
A
KQYQFYQTERVKNFH
SGLLLSRVMKERDAQIEFRKSKIKSDKKWEEQLKLNIEKAFKEEQEKAEKRHRE
R
VALAKDHLK
QIKEHEEEEERRKKYEEKDAEEIKRQNALYEIEMRKKLEKKREEMHESRRRFLEHMQDKH
I
IKAVEQQQQEEEDEKMRKFIKAKKRLIQMGKEKEAETH
RLMEKRRERIHNFLSELLKEKLDNEDMIIAR
D
IAEAEAEWEKREREKDEKNKAELKTIAEYRAIV
MKNKEEEERQRKIEAKEQLLAVMKADQIFWEHEKEK
K
CKADKEHQEVQDAHIQQM
AKNKFNAKQAKQAELDYCRLTEALVAEKEKEFQDYAREVIELESETTNKYI
Y
PLVKAVQEGPGGGRGPVFVDRGGLRPSYQANDVTGVQLPFYNSQGPKYNFQKSKRRLGFTW




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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