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Report for CCDS46508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46508.1 Public Homo sapiens 2 SPAG16 24 110 108 CCDS HistoryNCBI Gene:79582Re-query CCDS DB by CCDS ID:46508.1Re-query CCDS DB by GeneID:79582See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432529.6 ENSP00000415079.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432529.6Link to Ensembl Protein Viewer:ENSP00000415079.2Re-query CCDS DB by Nucleotide ID:ENST00000432529Re-query CCDS DB by Protein ID:ENSP00000415079
Original member Current member NCBI NM_001025436.3 NP_001020607.1 Accepted alive Link to Nucleotide Sequence:NM_001025436.3Link to Protein Sequence:NP_001020607.1Re-query CCDS DB by Nucleotide ID:NM_001025436Re-query CCDS DB by Protein ID:NP_001020607Link to BLAST:NP_001020607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020607.1 183 Q8N0X2-4 183 100% 0 0

Chromosomal Locations for CCDS 46508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 213284484 213284619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 213296064 213296110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 213297262 213297357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 213310059 213310177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 213317219 213317372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCTGCTCAGCGAGGGATGCCCAGCTCCGCCGTGAGGGTCCTGGAAGAGGCGTTGGGCATGGGTTTGA
CG
GCAGCCGGGGACGCGAGGGACACGGCGGACGCGGTGGCGGCTGAGGGCGCCTACTACCTGGAACAGGT
C
ACCATAACTGAAGCATCTGAAGATGACTATGAATATGAAGAGATACCAGATGACAATTTTAGCATCCCA
GAA
GGTGAAGAAGATCTGGCAAAAGCAATTCAGATGGCCCAAGAACAGGCTACAGATACTGAAATTTTGG
AA
CGGAAAACAGTTCTTCCTTCAAAGCATGCAGTACCTGAAGTAATAGAAGACTTTCTCTGCAATTTCTT
G
ATCAAAATGGGAATGACCAGAACTCTTGATTGCTTTCAGTCTGAATGGTATGAGTTAATACAGAAAGGA
GTG
ACTGAACTTAGAACTGTTGGGAATGTTCCAGATGTCTACACCCAGATTATGCTTTTGGAAAATGAGA
AC
AAAAATTTAAAGAAAGATTTGAAGCACTACAAACAAGCAGCTGAGTATGTTATTTTTTAA


Translation (183 aa):
MAAQRGMPSSAVRVLEEALGMGLTAAGDARDTADAVAAEGAYYLEQVTITEASEDDYEYEEIPDDNFSIP
E
GEEDLAKAIQMAQEQATDTEIL
ERKTVLPSKHAVPEVIEDFLCNFLIKMGMTRTLDCFQSEWYELIQKG
V
TELRTVGNVPDVYTQIMLLENENKNLKKDLKHYKQAAEYVIF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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