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Report for CCDS46553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46553.1 Public Homo sapiens 2 LRRFIP1 24 110 108 CCDS HistoryNCBI Gene:9208Re-query CCDS DB by CCDS ID:46553.1Re-query CCDS DB by GeneID:9208See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289175.10 ENSP00000289175.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289175.10Link to Ensembl Protein Viewer:ENSP00000289175.6Re-query CCDS DB by Nucleotide ID:ENST00000289175Re-query CCDS DB by Protein ID:ENSP00000289175
Original member Current member NCBI NM_001137553.2 NP_001131025.1 Accepted alive Link to Nucleotide Sequence:NM_001137553.2Link to Protein Sequence:NP_001131025.1Re-query CCDS DB by Nucleotide ID:NM_001137553Re-query CCDS DB by Protein ID:NP_001131025Link to BLAST:NP_001131025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001131025.1 752 Q32MZ4-3 752 100% 0 0

Chromosomal Locations for CCDS 46553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 237692456 237692521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237708544 237708630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237748364 237748399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237749199 237749324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237753309 237753479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237756095 237756187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237760064 237760205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237762603 237764140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGACCAGCCCCGCGGCCGCTCAAAGCCGGGAGATCGACTGTTTGAGCCCGGAAGCGCAGAAGCTGGCGG
AAGCCCGGCTCGCTGCAAAACGGGCGGCCCGCGCGGAGGCTCGCGAGATCCGCATGAAGGAGCTGGAGCG
GCAGCAGAAGGAGGTAGAAGAGAGACCAGAAAAAGATTTTACTGAGAAGGGGTCTCGTAACATGCCGGGC
CTGTCTGCAGCCACGCTGGCCTCTCTGGGTGGGACTTCCTCTCGGAGAGGCAGCGGAGACACCTCCATCT
CCATCGACACCGAGGCATCCATCAGGGAAATCAAGGACTCTCTAGCAGAAGTTGAAGAGAAATATAAGAA
GGCTATGGTTTCCAATGCTCAGCTAGACAATGAAAAGACAAACTTCATGTACCAGGTTGATACCCTAAAA
GATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAACAAAGAAT
TTGAAAGGGAAAAACACGCCCACAGTATACTGCAATTTCAGTTTGCTGAAGTCAAGGAGGCCCTGAAGCA
AAGAGAGGAAATGCTCGAGAAACATGGAATAATCCTAAATTCAGAAATAGCTACCAATGGAGAGACTTCC
GACACCCTCAATAATGTTGGATACCAAGGTCCTACCAAGATGACAAAAGAAGAGTTAAATGCCCTCAAGT
CGACAGGGGATGGGACCCTAGGAAGAGCCAGTGAAGTGGAGGTGAAAAATGAAATCGTGGCGAATGTGGG
GAAAAGAGAAATCTTGCACAATACTGAGAAAGAACAACACACAGAGGACACAGTGAAGGACTGTGTGGAC
ATAGAGGTATTCCCTGCTGGTGAGAATACCGAGGACCAGAAATCCTCTGAAGACACTGCCCCATTCCTAG
GAACCTTAGCAGGTGCTACCTATGAGGAACAGGTTCAAAGCCAAATTCTTGAGAGCAGTTCTCTCCCTGA
AAACACAGTACAGGTTGAGTCAAATGAGGTCATGGGTGCACCAGATGACAGGACCAGAACTCCCCTTGAG
CCATCCAACTGTTGGAGTGACTTAGATGGTGGGAACCACACAGAGAATGTGGGAGAGGCAGCAGTGACTC
AGGTTGAAGAGCAGGCAGGCACAGTGGCCTCGTGTCCTTTAGGGCATAGTGATGACACAGTTTATCATGA
TGACAAATGTATGGTAGAGGTCCCCCAAGAGTTAGAGACAAGCACAGGGCATAGTTTAGAGAAAGAATTC
ACCAACCAGGAAGCAGCTGAGCCCAAGGAGGTTCCAGCGCACAGTACAGAAGTAGGTAGGGATCACAACG
AAGAAGAGGGTGAAGAAACAGGATTAAGGGACGAGAAACCAATCAAGACAGAAGTTCCTGGTTCTCCAGC
AGGAACTGAGGGCAACTGTCAGGAAGCGACAGGTCCAAGTACAGTAGACACTCAAAATGAACCCTTAGAT
ATGAAAGAGCCCGATGAAGAAAAGAGTGACCAACAGGGAGAGGCATTGGACTCATCGCAGAAGAAGACAA
AGAACAAGAAAAAGAAAAACAAGAAGAAAAAATCCCCAGTACCCGTAGAAACCCTTAAAGATGTTAAAAA
AGAGTTAACGTATCAGAACACAGATTTAAGTGAAATTAAGGAAGAAGAGCAGGTAAAGTCTACTGACAGA
AAGTCAGCAGTGGAAGCCCAAAACGAGGTGACTGAAAATCCAAAACAGAAAATTGCAGCAGAAAGCAGTG
AAAATGTTGATTGTCCGGAGAATCCTAAAATTAAGTTGGATGGAAAACTTGACCAAGAAGGTGATGATGT
ACAAACAGCAGCTGAGGAGGTACTAGCTGATGGAGACACATTAGATTTTGAGGATGACACCGTTCAATCA
TCAGGCCCGAGGGCTGGTGGTGAAGAATTAGATGAAGGTGTTGCAAAAGATAATGCTAAAATAGATGGTG
CCACTCAAAGCAGTCCTGCAGAACCAAAGAGCGAAGACGCAGATCGCTGCACCCTGCCCGAACATGAAAG
TCCCTCACAGGACATTAGTGATGCCTGTGAAGCAGAAAGTACAGAGAGGTGTGAGATGTCAGAACATCCA
AGTCAGACCGTCAGGAAAGCTTTAGACAGCAATAGCCTAGAGAACGATGACTTGTCGGCACCAGGAAGAG
AGCCAGGGCACTTCAATCCAGAAAGCAGAGAAGATACCAGAGGAGGGAATGAGAAGGGCAAAAGCAAAGA
AGACTGTACCATGTCCTAA

Translation (752 aa):
MTSPAAAQSREIDCLSPEAQKLAEARLAAKRAARAEAREIRMKELERQQKEVEERPEKDFTEKGSRNMPG
LSAATLASLGGTSSRRGSGDTSISIDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLK
DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEKHGIILNSEIATNGETS
DTLNNVGYQGPTKMTKEELNALKSTGDGTLGRASEVEVKNEIVANVGKREILHNTEKEQHTEDTVKDCVD
IEVFPAGENTEDQKSSEDTAPFLGTLAGATYEEQVQSQILESSSLPENTVQVESNEVMGAPDDRTRTPLE
PSNCWSDLDGGNHTENVGEAAVTQVEEQAGTVASCPLGHSDDTVYHDDKCMVEVPQELETSTGHSLEKEF
TNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGPSTVDTQNEPLD
MKEPDEEKSDQQGEALDSSQKKTKNKKKKNKKKKSPVPVETLKDVKKELTYQNTDLSEIKEEEQVKSTDR
KSAVEAQNEVTENPKQKIAAESSENVDCPENPKIKLDGKLDQEGDDVQTAAEEVLADGDTLDFEDDTVQS
SGPRAGGEELDEGVAKDNAKIDGATQSSPAEPKSEDADRCTLPEHESPSQDISDACEAESTERCEMSEHP
SQTVRKALDSNSLENDDLSAPGREPGHFNPESREDTRGGNEKGKSKEDCTMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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