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Report for CCDS46577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46577.1 Public Homo sapiens 20 RNF24 24 110 108 CCDS HistoryNCBI Gene:11237Re-query CCDS DB by CCDS ID:46577.1Re-query CCDS DB by GeneID:11237See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432261.6 ENSP00000388550.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432261.6Link to Ensembl Protein Viewer:ENSP00000388550.2Re-query CCDS DB by Nucleotide ID:ENST00000432261Re-query CCDS DB by Protein ID:ENSP00000388550
Original member Current member EBI ENST00000545616.2 ENSP00000444711.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545616.2Link to Ensembl Protein Viewer:ENSP00000444711.1Re-query CCDS DB by Nucleotide ID:ENST00000545616Re-query CCDS DB by Protein ID:ENSP00000444711
Original member Current member NCBI NM_001134338.3 NP_001127810.1 Accepted alive Link to Nucleotide Sequence:NM_001134338.3Link to Protein Sequence:NP_001127810.1Re-query CCDS DB by Nucleotide ID:NM_001134338Re-query CCDS DB by Protein ID:NP_001127810Link to BLAST:NP_001127810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127810.1 169 Q9Y225-2 169 100% 0 0

Chromosomal Locations for CCDS 46577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3934063 3934201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3934994 3935073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3945177 3945218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3948237 3948279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3963875 3964024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3974332 3974387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGTTGAATAAGAGTGGTGAGAGCAGATATCCTGCCTTGTTCCCGGTCTTAGGGGGTTCATCCATGAGCT
CGGATTTCCCACATTACAACTTCAGGATGCCTAATATTGGATTCCAGAATCTGCCTCTCAACATATATAT
TGTGGTTTTTGGTACTGCTATATTTGTCTTCATCCTTAGTTTACTCTTCTGTTGCTACTTGATTAGGCTA
AGACATCAAGCACACAAAGAATTTTATGCCTACAAACAGGTTATATTAAAAGAGAAAGTAAAAGAATTGA
ATTTACATGAGCTCTGTGCAGTGTGCCTAGAAGACTTCAAGCCTCGAGATGAGTTGGGGATTTGCCCATG
TAAGCACGCCTTCCACAGAAAGTGCCTTATTAAGTGGCTGGAGGTTCGTAAAGTGTGTCCCCTGTGCAAC
ATGCCAGTTCTACAGCTGGCCCAGTTGCACAGTAAGCAGGACCGTGGACCCCCTCAGGGGCCCCTTCCTG
GGGCAGAGAACATTGTATAG

Translation (169 aa):
MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRL
RHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN
MPVLQLAQLHSKQDRGPPQGPLPGAENIV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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