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Report for CCDS46630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46630.1 Public Homo sapiens 20 ARFRP1 24 110 108 CCDS HistoryNCBI Gene:10139Re-query CCDS DB by CCDS ID:46630.1Re-query CCDS DB by GeneID:10139See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46630.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612157.4 ENSP00000479058.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612157.4Link to Ensembl Protein Viewer:ENSP00000479058.1Re-query CCDS DB by Nucleotide ID:ENST00000612157Re-query CCDS DB by Protein ID:ENSP00000479058
Original member Current member NCBI NM_001134758.4 NP_001128230.1 Accepted alive Link to Nucleotide Sequence:NM_001134758.4Link to Protein Sequence:NP_001128230.1Re-query CCDS DB by Nucleotide ID:NM_001134758Re-query CCDS DB by Protein ID:NP_001128230Link to BLAST:NP_001128230.1
Original member Current member NCBI NM_001267549.3 NP_001254478.1 Accepted alive Link to Nucleotide Sequence:NM_001267549.3Link to Protein Sequence:NP_001254478.1Re-query CCDS DB by Nucleotide ID:NM_001267549Re-query CCDS DB by Protein ID:NP_001254478Link to BLAST:NP_001254478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128230.1 173 Q13795-2 173 100% 0 0
NP_001254478.1 173 Q13795-2 173 100% 0 0

Chromosomal Locations for CCDS 46630.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63700598 63700702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63701830 63701900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63702136 63702217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63706357 63706439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63706651 63706738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63706999 63707091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGTACACGCTGCTGTCGGGCTTGTACAAGTACATGTTTCAGAAGGACGAGTACTGCATCCTGATCCTGG
GC
CTGGACAATGCTGGGAAGACGACCTTCCTGGAGCAGTCGAAAACCCGATTTAACAAGAACTACAAGGG
G
ATGAGTCTATCCAAAATCACCACCACCGTGGGCCTAAACATCGGCACTGTGGATGTGGGAAAGGCTCGG
CTC
ATGTTCTGGGACTTAGGAGGGCAGGAAGAGCTGCAGTCTTTGTGGGACAAGTATTATGCGGAGTGTC
AC
GGCGTCATCTACGTCATTGACTCCACCGACGAGGAGAGGCTGGCTGAGTCCAAGCAGGCGTTTGAGAA
G
GTGGTGACCAGCGAGGCGCTGTGCGGTGTCCCCGTCTTGGTGCTGGCCAACAAGCAGGATGTGGAGACG
TGC
CTCTCAATCCCTGACATCAAGACGGCCTTCAGCGACTGCACCAGCAAGATCGGCAGGCGAGATTGCC
TG
ACCCAGGCCTGCTCGGCCCTCACAGGGTGA


Translation (173 aa):
MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKAR
L
MFWDLGGQEELQSLWDK
YYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVET
C
LSIPDIKTAFSDCTSKIGRRDCLTQACSALTG




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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