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Report for CCDS46666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46666.1 Public Homo sapiens 22 SCARF2 24 110 108 CCDS HistoryNCBI Gene:91179Re-query CCDS DB by CCDS ID:46666.1Re-query CCDS DB by GeneID:91179See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 46666.1
This CCDS representation has been updated to correct a frameshifted segment in the 3' coding region, supported by transcript and orthologous alignments, and by the update of the GRCh37 reference genome assembly to the GRCh38 assembly.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622235.5 ENSP00000477564.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622235.5Link to Ensembl Protein Viewer:ENSP00000477564.2Re-query CCDS DB by Nucleotide ID:ENST00000622235Re-query CCDS DB by Protein ID:ENSP00000477564
Original member Current member NCBI NM_182895.5 NP_878315.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182895.5Link to Protein Sequence:NP_878315.2Re-query CCDS DB by Nucleotide ID:NM_182895Re-query CCDS DB by Protein ID:NP_878315Link to BLAST:NP_878315.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878315.2 866 Q96GP6-2 866 100% 0 0

Chromosomal Locations for CCDS 46666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20425375 20426282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20427398 20427550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20429225 20429340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20429536 20429653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20429730 20429833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20430429 20430557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20430690 20430908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20431018 20431537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20431745 20431846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20431930 20431988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20437582 20437754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2601 nt):
ATGGAGGGCGCAGGGCCCCGGGGGGCCGGGCCGGCGCGGCGCCGGGGAGCCGGGGGGCCGCCGTCACCGC
TGCTGCCGTCGCTGCTGCTGCTGCTGCTGCTCTGGATGCTGCCGGACACCGTGGCGCCTCAGGAACTGAA
CCCTCGCGGCCGCAACGTGTGCCGTGCTCCCGGCTCCCAGGTGCCCACGTGCTGCGCTGGCTGGAGGCAG
CAAGGGGACGAGTGTGGGATTGCGGTGTGCGAAGGCAACTCCACGTGCTCAGAGAACGAGGTGTGCGTGA
GGCCTGGCGAGTGCCGCTGCCGCCACGGCTACTTCGGTGCCAACTGCGACACCAAGTGCCCGCGCCAGTT
CTGGGGCCCCGACTGCAAGGAGCTGTGTAGCTGCCACCCACACGGGCAGTGCGAGGACGTGACAGGCCAG
TGTACTTGTCACGCGCGGCGCTGGGGCGCGCGCTGCGAGCATGCGTGCCAGTGCCAGCACGGCACGTGCC
ACCCGCGGAGCGGCGCGTGCCGCTGTGAGCCCGGCTGGTGGGGCGCGCAGTGCGCCAGCGCGTGCTACTG
CAGCGCCACGTCGCGCTGCGACCCACAGACCGGCGCCTGCCTGTGCCACGCAGGCTGGTGGGGCCGCAGC
TGCAACAACCAGTGCGCCTGCAACTCGTCTCCCTGCGAGCAGCAGAGCGGCCGCTGTCAGTGCCGCGAGC
GTACGTTCGGCGCGCGCTGCGATCGCTACTGCCAGTGCTTCCGCGGCCGCTGCCACCCTGTGGACGGCAC
GTGTGCCTGCGAGCCGGGCTACCGCGGCAAGTACTGTCGCGAGCCGTGCCCCGCCGGCTTCTACGGCTTG
GGCTGTCGCCGCCGGTGTGGCCAGTGCAAGGGCCAGCAGCCGTGCACGGTGGCCGAGGGCCGCTGCTTGA
CGTGCGAGCCCGGCTGGAACGGAACCAAGTGCGACCAGCCTTGCGCCACCGGTTTCTATGGCGAGGGCTG
CAGCCACCGCTGTCCGCCATGCCGCGACGGGCATGCCTGTAACCATGTCACCGGCAAGTGTACGCGCTGC
AACGCGGGCTGGATCGGCGACCGGTGCGAGACCAAGTGTAGCAATGGCACTTACGGCGAGGACTGCGCCT
TCGTGTGCGCCGACTGCGGCAGCGGACACTGCGACTTCCAGTCGGGGCGCTGCCTGTGCAGCCCTGGCGT
CCACGGGCCCCACTGTAACGTGACGTGCCCGCCCGGACTCCACGGCGCGGACTGTGCTCAGGCCTGCAGC
TGCCACGAGGACACGTGCGACCCGGTCACTGGTGCCTGCCACCTAGAAACCAACCAGCGCAAGGGCGTGA
TGGGCGCGGGCGCGCTGCTCGTCCTGCTCGTCTGCCTGCTGCTCTCGCTGCTCGGCTGCTGCTGCGCTTG
CCGCGGCAAGGACCCTACGCGCCGGGAGCTTTCGCTTGGGAGGAAGAAGGCGCCGCACCGACTATGCGGG
CGCTTCAGTCGCATCAGCATGAAGCTGCCCCGGATCCCGCTCCGGAGGCAGAAACTACCCAAAGTCGTAG
TGGCCCACCACGACCTGGATAACACACTCAACTGCAGCTTCCTGGAGCCACCCTCAGGGCTGGAGCAGCC
CTCACCATCCTGGTCCTCTCGGGCCTCCTTCTCCTCGTTTGACACCACTGATGAAGGCCCTGTGTACTGT
GTACCCCATGAGGAGGCACCAGCGGAGAGCCGGGACCCCGAAGTCCCCACTGTCCCTGCCGAGGCGCCGG
CGCCGTCCCCTGTGCCCTTGACCACGCCAGCCTCCGCCGAGGAGGCGATACCCCTCCCCGCGTCCTCCGA
CAGCGAGCGGTCGGCGTCCAGCGTGGAGGGGCCCGGAGGGGCTCTGTACGCGCGCGTGGCCCGACGCGAG
GCCCGGCCGGCCCGGGCCCGGGGCGAGATTGGGGGCCTGTCGCTGTCGCCATCGCCCGAGCGCAGGAAAC
CGCCGCCACCTGACCCCGCCACCAAGCCTAAGGTGTCCTGGATCCACGGCAAGCACAGCGCCGCTGCAGC
TGGCCGTGCGCCCTCACCACCGCCGCCAGGCTCCGAGGCCGCGCCCAGCCCCAGCAAGAGGAAACGGACG
CCCAGCGACAAATCGGCGCATACGGTCGAACACGGCAGCCCCCGGACCCGCGACCCAACGCCGCGGCCCC
CCGGGCTGCCCGAGGAGGCGACAGCCCTCGCTGCGCCCTCGCCGCCCAGGGCCCGAGCGCGGGGCCGCGG
CCCCGGCCTCTTGGAGCCCACGGACGCCGGCGGTCCCCCGCGAAGCGCGCCCGAGGCTGCCTCCATGTTG
GCCGCTGAGCTGCGCGGCAAGACTCGCAGCCTGGGCCGCGCCGAGGTGGCCCTGGGCGCGCAGGGCCCCA
GGGAAAAGCCGGCGCCCCCACAGAAAGCCAAGCGCTCCGTGCCGCCAGCCTCGCCCGCCCGCGCGCCCCC
AGCGACCGAAACCCCGGGGCCTGAGAAGGCGGCGACCGACTTGCCCGCGCCTGAGACCCCCCGGAAGAAG
ACCCCCATCCAGAAGCCGCCGCGCAAGAAGAGCCGGGAGGCGGCGGGCGAGCTGGGCAGGGCGGGCGCAC
CCACCCTGTAG

Translation (866 aa):
MEGAGPRGAGPARRRGAGGPPSPLLPSLLLLLLLWMLPDTVAPQELNPRGRNVCRAPGSQVPTCCAGWRQ
QGDECGIAVCEGNSTCSENEVCVRPGECRCRHGYFGANCDTKCPRQFWGPDCKELCSCHPHGQCEDVTGQ
CTCHARRWGARCEHACQCQHGTCHPRSGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHAGWWGRS
CNNQCACNSSPCEQQSGRCQCRERTFGARCDRYCQCFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGL
GCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHACNHVTGKCTRC
NAGWIGDRCETKCSNGTYGEDCAFVCADCGSGHCDFQSGRCLCSPGVHGPHCNVTCPPGLHGADCAQACS
CHEDTCDPVTGACHLETNQRKGVMGAGALLVLLVCLLLSLLGCCCACRGKDPTRRELSLGRKKAPHRLCG
RFSRISMKLPRIPLRRQKLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGPVYC
VPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARRE
ARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRT
PSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASML
AAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKK
TPIQKPPRKKSREAAGELGRAGAPTL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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