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Report for CCDS46808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46808.1 Public Homo sapiens 3 GASK1A 24 110 108 CCDS HistoryNCBI Gene:729085Re-query CCDS DB by CCDS ID:46808.1Re-query CCDS DB by GeneID:729085See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273146.6 ENSP00000273146.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273146.6Link to Ensembl Protein Viewer:ENSP00000273146.2Re-query CCDS DB by Nucleotide ID:ENST00000273146Re-query CCDS DB by Protein ID:ENSP00000273146
Original member Current member EBI ENST00000430121.3 ENSP00000407301.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430121.3Link to Ensembl Protein Viewer:ENSP00000407301.2Re-query CCDS DB by Nucleotide ID:ENST00000430121Re-query CCDS DB by Protein ID:ENSP00000407301
Original member Current member NCBI NM_001129908.3 NP_001123380.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001129908.3Link to Protein Sequence:NP_001123380.2Re-query CCDS DB by Nucleotide ID:NM_001129908Re-query CCDS DB by Protein ID:NP_001123380Link to BLAST:NP_001123380.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123380.2 575 Q9UFP1 575 100% 0 0

Chromosomal Locations for CCDS 46808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42979643 42979645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 43032267 43033553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 43053521 43053643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 43055432 43055535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 43056176 43056386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGCGTCTTGGCTCCGGAGAAAGCTGCGTGGCAAGAGGCGGCCAGTGATAGCGTTCTGCCTCTTGATGA
TCCTATCTGCGATGGCTGTCACCCGCTTTCCCCCACAGCGTCCATCCGCCGGCCCAGACCCTGGTCCCAT
GGAGCCTCAGGGGGTAACTGGCGCCCCTGCAACCCATATCCGGCAGGCTTTGAGCTCCAGCCGGAGGCAG
CGGGCAAGAAACATGGGCTTCTGGAGAAGCCGTGCTTTGCCCAGGAACTCCATCTTGGTCTGTGCTGAGG
AGCAAGGCCATAGAGCAAGAGTGGACAGAAGCAGGGAGTCCCCAGGAGGGGACCTCAGGCATCCAGGGAG
GGTGAGGAGGGACATTACTTTGTCAGGACATCCAAGACTCAGTACTCAGCATGTTGTGCTCCTGAGGGAG
GATGAGGTTGGAGATCCAGGAACCAAAGACCTGGGCCACCCCCAGCATGGCAGTCCCATCCAGGAGACAC
AGAGTGAGGTGGTCACCCTGGTCAGTCCACTCCCAGGGAGTGACATGGCAGCTTTACCGGCTTGGAGAGC
TACTTCTGGGCTGACACTCTGGCCCCATACAGCAGAAGGCAGGGATCTGCTGGGAGCTGAGAACAGAGCC
TTGACTGGTGGGCAACAAGCAGAGGATCCCACCTTGGCCTCAGGAGCTCATCAGTGGCCTGGCTCTGTTG
AGAAGCTGCAAGGGTCAGTATGGTGTGATGCTGAGACGCTGTTGAGCAGCTCGAGGACTGGTGGGCAGGC
TCCCCCATGGCTGACAGACCACGATGTGCAGATGCTCCGTCTGTTGGCACAGGGGGAGGTGGTGGACAAA
GCCAGGGTCCCCGCCCATGGGCAGGTGCTACAGGTTGGCTTCTCCACTGAGGCTGCCCTTCAGGACCTGT
CCTCTCCCAGGCTCAGCCAACTCTGTTCCCAAGGGCTCTGTGGCCTGATCAAGAGGCCTGGGGACCTGCC
TGAGGTCCTGTCCTTCCACGTAGATCGTGTGCTGGGGCTGCGCCGGAGCCTACCTGCTGTGGCCCGCCGC
TTCCATAGCCCCCTCCTGCCCTACCGATACACAGACGGTGGAGCAAGGCCTGTCATCTGGTGGGCACCCG
ATGTGCAGCACCTGAGCGACCCAGATGAGGATCAGAACTCTCTGGCCTTGGGCTGGCTGCAGTATCAGGC
CCTGCTGGCACACAGCTGCAACTGGCCAGGCCAGGCCCCGTGCCCGGGCATCCACCATACCGAGTGGGCA
CGCCTGGCGCTCTTCGACTTCCTGTTGCAGGTCCACGACCGCTTGGATCGCTACTGCTGTGGCTTCGAGC
CTGAGCCCTCAGACCCCTGTGTGGAAGAGAGGCTCCGAGAGAAATGCCAGAACCCAGCCGAGCTGCGGCT
GGTCCACATCCTGGTCCGGAGCAGCGATCCATCTCACCTGGTCTACATCGATAACGCTGGCAACCTTCAG
CACCCTGAGGACAAGCTGAACTTTCGGCTGCTGGAGGGCATAGATGGGTTTCCTGAGTCTGCCGTGAAGG
TTCTCGCATCAGGGTGTCTACAGAACATGCTGCTGAAGTCGCTGCAGATGGACCCAGTGTTCTGGGAAAG
CCAAGGCGGAGCCCAGGGGCTGAAGCAGGTCCTCCAGACCCTGGAGCAGCGAGGACAGGTGCTGCTGGGA
CACATCCAAAAGCACAACCTCACACTCTTCAGGGACGAGGACCCATAA

Translation (575 aa):
MASWLRRKLRGKRRPVIAFCLLMILSAMAVTRFPPQRPSAGPDPGPMEPQGVTGAPATHIRQALSSSRRQ
RARNMGFWRSRALPRNSILVCAEEQGHRARVDRSRESPGGDLRHPGRVRRDITLSGHPRLSTQHVVLLRE
DEVGDPGTKDLGHPQHGSPIQETQSEVVTLVSPLPGSDMAALPAWRATSGLTLWPHTAEGRDLLGAENRA
LTGGQQAEDPTLASGAHQWPGSVEKLQGSVWCDAETLLSSSRTGGQAPPWLTDHDVQMLRLLAQGEVVDK
ARVPAHGQVLQVGFSTEAALQDLSSPRLSQLCSQGLCGLIKRPGDLPEVLSFHVDRVLGLRRSLPAVARR
FHSPLLPYRYTDGGARPVIWWAPDVQHLSDPDEDQNSLALGWLQYQALLAHSCNWPGQAPCPGIHHTEWA
RLALFDFLLQVHDRLDRYCCGFEPEPSDPCVEERLREKCQNPAELRLVHILVRSSDPSHLVYIDNAGNLQ
HPEDKLNFRLLEGIDGFPESAVKVLASGCLQNMLLKSLQMDPVFWESQGGAQGLKQVLQTLEQRGQVLLG
HIQKHNLTLFRDEDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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