NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46837.1 Public Homo sapiens 3 IQCF3 24 110 108 CCDS HistoryNCBI Gene:401067Re-query CCDS DB by CCDS ID:46837.1Re-query CCDS DB by GeneID:401067See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446775.5 ENSP00000401767.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446775.5Link to Ensembl Protein Viewer:ENSP00000401767.1Re-query CCDS DB by Nucleotide ID:ENST00000446775Re-query CCDS DB by Protein ID:ENSP00000401767
Original member Current member EBI ENST00000440739.4 ENSP00000402012.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000440739.4Link to Ensembl Protein Viewer:ENSP00000402012.2Re-query CCDS DB by Nucleotide ID:ENST00000440739Re-query CCDS DB by Protein ID:ENSP00000402012
Original member Current member EBI ENST00000437810.7 ENSP00000409373.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437810.7Link to Ensembl Protein Viewer:ENSP00000409373.2Re-query CCDS DB by Nucleotide ID:ENST00000437810Re-query CCDS DB by Protein ID:ENSP00000409373
Original member Current member EBI ENST00000456080.5 ENSP00000415609.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456080.5Link to Ensembl Protein Viewer:ENSP00000415609.1Re-query CCDS DB by Nucleotide ID:ENST00000456080Re-query CCDS DB by Protein ID:ENSP00000415609
Original member Current member NCBI NM_001085479.3 NP_001078948.1 Accepted alive Link to Nucleotide Sequence:NM_001085479.3Link to Protein Sequence:NP_001078948.1Re-query CCDS DB by Nucleotide ID:NM_001085479Re-query CCDS DB by Protein ID:NP_001078948Link to BLAST:NP_001078948.1
Original member Current member NCBI NM_001207023.2 NP_001193952.1 Accepted alive Link to Nucleotide Sequence:NM_001207023.2Link to Protein Sequence:NP_001193952.1Re-query CCDS DB by Nucleotide ID:NM_001207023Re-query CCDS DB by Protein ID:NP_001193952Link to BLAST:NP_001193952.1
Original member Current member NCBI NM_001393887.1 NP_001380816.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393887.1Link to Protein Sequence:NP_001380816.1Re-query CCDS DB by Nucleotide ID:NM_001393887Re-query CCDS DB by Protein ID:NP_001380816Link to BLAST:NP_001380816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078948.1 154 P0C7M6 154 100% 0 0
NP_001193952.1 154 P0C7M6 154 100% 0 0
NP_001380816.1 154 P0C7M6 154 100% 0 0

Chromosomal Locations for CCDS 46837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51829476 51829493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51829665 51829712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51830403 51830801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGGCAGTAAATGCTGTAAAGGTGGTCCAGATGAAGATGCAGTAGAAAGACAGAGGCGGCAGAAGTTGC
TTCTTGCACAACTGCATCACAGAAAAAGGGTGAAGGCAGCTGGGCAGATCCAGGCCTGGTGGCGTGGGGT
CCTGGTGCGCAGGACCCTGCTGGTTGCTGCCCTCAGGGCCTGGATGATTCAGTGCTGGTGGAGGACGTTG
GTGCAGAGACGGATCCGTCAGCGGCGGCAGGCCCTGTTGAGGGTCTACGTCATCCAGGAGCAGGCGACGG
TCAAGCTCCAGTCCTGCATCCGCATGTGGCAGTGCCGGCAATGTTACCGCCAAATGTGCAATGCTCTCTG
CTTGTTCCAGGTCCCAGAGAGCAGCCTTGCCTTCCAGACTGATGGCTTTTTACAGGTCCAATATGCAATC
CCTTCAAAGCAGCCAGAGTTCCACATTGAAATCCTATCAATCTGA

Translation (154 aa):
MGSKCCKGGPDEDAVERQRRQKLLLAQLHHRKRVKAAGQIQAWWRGVLVRRTLLVAALRAWMIQCWWRTL
VQRRIRQRRQALLRVYVIQEQATVKLQSCIRMWQCRQCYRQMCNALCLFQVPESSLAFQTDGFLQVQYAI
PSKQPEFHIEILSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH