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Report for CCDS46859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46859.1 Public Homo sapiens 3 SYNPR 24 110 108 CCDS HistoryNCBI Gene:132204Re-query CCDS DB by CCDS ID:46859.1Re-query CCDS DB by GeneID:132204See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478300.6 ENSP00000418994.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000478300.6Link to Ensembl Protein Viewer:ENSP00000418994.1Re-query CCDS DB by Nucleotide ID:ENST00000478300Re-query CCDS DB by Protein ID:ENSP00000418994
Original member Current member NCBI NM_001130003.2 NP_001123475.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130003.2Link to Protein Sequence:NP_001123475.1Re-query CCDS DB by Nucleotide ID:NM_001130003Re-query CCDS DB by Protein ID:NP_001123475Link to BLAST:NP_001123475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123475.1 285 Q8TBG9-2 285 100% 0 0

Chromosomal Locations for CCDS 46859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63278534 63278551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63278677 63278742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63480832 63480956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63556543 63556741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63609125 63609316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63615224 63615481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGACCCTGTGAGTCAGCTGGCCTCTGCGGGCACCTTCCGGGTGCTGAAGGAGCCCCTTGCCTTCCTGC
GAGCCCTGGAATTGCTTTTTGCAATCTTTGCATTTGCAACATGCGGTGGCTATTCTGGAGGCCTGCGGCT
GAGTGTGGACTGCGTCAACAAGACAGAAAGTAACCTCAGCATCGACATAGCGTTTGCCTACCCATTCAGG
TTGCACCAGGTGACGTTTGAGGTGCCCACCTGCGAGGGAAAGGAACGGCAGAAGCTGGCATTGATTGGTG
ACTCCTCGTCTTCAGCAGAGTTCTTCGTCACTGTTGCTGTCTTCGCCTTCCTCTACTCTTTGGCTGCCAC
TGTCGTTTACATTTTCTTCCAGAACAAATACCGGGAAAACAACCGGGGCCCACTCATTGACTTCATTGTC
ACTGTAGTCTTTTCGTTCTTGTGGTTGGTGGGTTCATCAGCTTGGGCAAAAGGACTGTCTGACGTCAAAG
TTGCAACGGATCCCAAGGAAGTATTGCTACTAATGTCAGCTTGCAAACAGCCATCCAACAAATGCATGGC
TATCCACAGCCCTGTTATGTCAAGCTTAAACACTTCTGTGGTCTTTGGATTCTTGAACTTTATTCTCTGG
GCTGGAAACATATGGTTTGTTTTCAAGGAGACCGGCTGGCATTCTTCGGGACAGAGATATCTTTCAGATC
CAATGGAGAAGCACTCCAGCAGCTATAATCAAGGTGGTTACAACCAAGACAGCTATGGATCAAGCAGTGG
GTACAGTCAGCAGGCGAGTTTGGGGCCAACCTCAGATGAGTTTGGCCAACAGCCTACTGGCCCCACTTCC
TTTACCAATCAGATTTAA

Translation (285 aa):
MDPVSQLASAGTFRVLKEPLAFLRALELLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFR
LHQVTFEVPTCEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIV
TVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSVVFGFLNFILW
AGNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTS
FTNQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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