NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46938.1 Public Homo sapiens 3 ARHGEF26 24 110 108 CCDS HistoryNCBI Gene:26084Re-query CCDS DB by CCDS ID:46938.1Re-query CCDS DB by GeneID:26084See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356448.8 ENSP00000348828.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356448.8Link to Ensembl Protein Viewer:ENSP00000348828.4Re-query CCDS DB by Nucleotide ID:ENST00000356448Re-query CCDS DB by Protein ID:ENSP00000348828
Original member Current member EBI ENST00000465093.6 ENSP00000423418.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000465093.6Link to Ensembl Protein Viewer:ENSP00000423418.1Re-query CCDS DB by Nucleotide ID:ENST00000465093Re-query CCDS DB by Protein ID:ENSP00000423418
Original member Current member NCBI NM_001251962.2 NP_001238891.1 Accepted alive Link to Nucleotide Sequence:NM_001251962.2Link to Protein Sequence:NP_001238891.1Re-query CCDS DB by Nucleotide ID:NM_001251962Re-query CCDS DB by Protein ID:NP_001238891Link to BLAST:NP_001238891.1
Original member Current member NCBI NM_015595.4 NP_056410.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015595.4Link to Protein Sequence:NP_056410.3Re-query CCDS DB by Nucleotide ID:NM_015595Re-query CCDS DB by Protein ID:NP_056410Link to BLAST:NP_056410.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238891.1 871 Q96DR7-1 871 100% 0 0
NP_056410.3 871 Q96DR7-1 871 100% 0 0

Chromosomal Locations for CCDS 46938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 154121993 154123075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154124410 154124449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154129574 154129719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154149389 154149445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154152772 154152932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154187685 154187837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154191289 154191418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154194644 154194718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154217869 154217958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154225856 154226010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154240370 154240579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154253116 154253183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154254720 154254824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154255331 154255473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGGACGGCGAGAGCGAGGTGGATTTTTCTAGCAACAGCATAACCCCTTTGTGGCGGAGGCGGTCGATTC
CTCAGCCCCACCAGGTTCTGGGCCGGAGCAAGCCGAGGCCCCAGTCCTACCAGAGCCCCAACGGGTTACT
AATTACGGATTTCCCGGTGGAGGACGGAGGGACGCTCCTCGCAGCGCAGATTCCCGCCCAGGTGCCCACC
GCCTCGGACAGCAGGACGGTACATAGGAGCCCCCTGCTTCTGGGCGCCCAGCGGAGAGCGGTGGCCAATG
GTGGGACGGCATCCCCGGAGTACAGGGCTGCCTCTCCTCGACTTCGACGGCCCAAGTCACCCAAGCTCCC
CAAAGCGGTGCCTGGCGGCTCCCCGAAATCCCCAGCAAATGGCGCGGTGACCTTGCCTGCGCCGCCGCCG
CCGCCGGTTCTGCGCCCCCCGCGGACTCCTAACGCGCCCGCCCCCTGCACCCCCGAGGAGGACCTTACTG
GGTTGACTGCCAGCCCGGTGCCTTCGCCCACTGCAAATGGCCTTGCCGCTAATAACGACTCTCCTGGGTC
AGGTTCGCAGTCCGGCCGGAAGGCAAAGGACCCCGAACGGGGGCTCTTTCCTGGGCCCCAGAAAAGTTCT
TCGGAACAAAAACTCCCCCTCCAAAGGCTGCCCTCCCAGGAGAACGAGCTCCTCGAGAATCCTTCCGTGG
TTTTGAGTACAAACAGCCCCGCCGCCCTCAAAGTGGGGAAGCAGCAGATCATTCCGAAGAGTCTGGCCTC
GGAAATTAAAATAAGTAAATCCAACAATCAAAATGTGGAGCCCCACAAGAGACTCCTCAAGGTGCGCAGC
ATGGTGGAGGGCCTAGGAGGACCCCTGGGTCACGCAGGGGAGGAGAGTGAGGTCGATAACGACGTGGATA
GCCCAGGGTCTCTGCGGAGAGGCTTGCGGTCCACGTCTTATCGCAGGGCAGTGGTCAGTGGCTTTGATTT
TGACAGTCCTACCAGCTCGAAGAAGAAGAACAGAATGTCCCAGCCTGTTCTGAAAGTGGTGATGGAAGAC
AAGGAGAAGTTTTCCAGTCTGGGAAGGATAAAGAAAAAAATGCTGAAAGGACAAGGAACATTTGATGGGG
AAGAAAATGCTGTCCTGTATCAAAACTACAAGGAAAAGGCCCTTGACATTGATTCTGATGAAGAGTCAGA
GCCCAAAGAACAGAAGTCAGATGAAAAAATTGTGATTCACCATAAGCCATTGAGATCCACATGGAGCCAA
CTCTCTGCGGTGAAAAGAAAGGGATTATCTCAGACAGTAAGCCAGGAGGAAAGAAAGAGACAAGAGGCTA
TCTTTGAAGTCATATCCTCTGAACATTCATATTTACTCAGCTTGGAGATCTTGATACGAATGTTTAAAAA
TTCTAAAGAACTGAGTGATACAATGACTAAAACCGAGAGGCACCATCTTTTCTCCAATATTACAGATGTC
TGTGAGGCAAGCAAAAAGTTCTTTATAGAGTTGGAAGCAAGACATCAGAATAATATCTTCATAGATGACA
TAAGTGACATTGTGGAAAAACACACAGCATCCACATTTGACCCATATGTGAAATACTGCACAAATGAAGT
CTACCAACAACGAACACTACAAAAATTGTTAGCTACCAATCCATCCTTTAAGGAAGTATTGTCAAGGATT
GAGTCCCATGAAGACTGTAGGAACTTACCCATGATCTCTTTTCTCATTCTCCCCATGCAGAGGGTGACCC
GCCTTCCCCTGCTGATGGATACTATCTGTCAAAAAACACCTAAGGACTCTCCGAAGTATGAAGTCTGCAA
AAGAGCCTTGAAGGAAGTTAGCAAGTTGGTTCGACTATGCAATGAGGGCGCCCGGAAGATGGAAAGGACT
GAGATGATGTACACAATTAACTCCCAGCTGGAATTTAAAATTAAGCCTTTTCCTTTAGTCTCCTCTTCCC
GGTGGTTGGTAAAAAGAGGTGAATTGACAGCCTATGTTGAAGACACTGTGCTTTTCTCAAGAAGGACATC
CAAACAGCAAGTCTACTTCTTTCTCTTTAACGATGTGCTCATTATCACCAAGAAGAAGAGTGAAGAAAGT
TACAACGTCAATGATTATTCCTTAAGAGATCAGCTATTGGTGGAATCTTGTGACAATGAAGAGCTTAATT
CTTCTCCAGGGAAGAACAGCTCCACAATGCTCTATTCAAGACAGAGCTCTGCCAGTCACCTCTTTACTCT
GACAGTCCTTAGTAACCACGCGAATGAGAAAGTGGAGATGCTACTAGGAGCTGAGACGCAGAGCGAGCGA
GCCCGCTGGATAACTGCCCTGGGACACAGCAGCGGGAAGCCGCCTGCAGACCGAACCTCACTGACCCAGG
TGGAAATCGTTAGGTCATTTACTGCTAAGCAGCCAGATGAACTCTCCCTGCAGGTGGCTGACGTCGTCCT
CATCTATCAACGTGTCAGCGATGGCTGGTATGAGGGGGAACGACTACGAGATGGAGAAAGAGGCTGGTTT
CCTATGGAATGTGCCAAGGAGATAACATGTCAAGCTACAATTGATAAGAATGTGGAGAGAATGGGACGCT
TGCTAGGACTGGAGACCAACGTGTAG

Translation (871 aa):
MDGESEVDFSSNSITPLWRRRSIPQPHQVLGRSKPRPQSYQSPNGLLITDFPVEDGGTLLAAQIPAQVPT
ASDSRTVHRSPLLLGAQRRAVANGGTASPEYRAASPRLRRPKSPKLPKAVPGGSPKSPANGAVTLPAPPP
PPVLRPPRTPNAPAPCTPEEDLTGLTASPVPSPTANGLAANNDSPGSGSQSGRKAKDPERGLFPGPQKSS
SEQKLPLQRLPSQENELLENPSVVLSTNSPAALKVGKQQIIPKSLASEIKISKSNNQNVEPHKRLLKVRS
MVEGLGGPLGHAGEESEVDNDVDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKVVMED
KEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEESEPKEQKSDEKIVIHHKPLRSTWSQ
LSAVKRKGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELSDTMTKTERHHLFSNITDV
CEASKKFFIELEARHQNNIFIDDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRI
ESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERT
EMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSRRTSKQQVYFFLFNDVLIITKKKSEES
YNVNDYSLRDQLLVESCDNEELNSSPGKNSSTMLYSRQSSASHLFTLTVLSNHANEKVEMLLGAETQSER
ARWITALGHSSGKPPADRTSLTQVEIVRSFTAKQPDELSLQVADVVLIYQRVSDGWYEGERLRDGERGWF
PMECAKEITCQATIDKNVERMGRLLGLETNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH