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Report for CCDS47072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47072.1 Public Homo sapiens 4 NPFFR2 24 110 108 CCDS HistoryNCBI Gene:10886Re-query CCDS DB by CCDS ID:47072.1Re-query CCDS DB by GeneID:10886See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395999.5 ENSP00000379321.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395999.5Link to Ensembl Protein Viewer:ENSP00000379321.1Re-query CCDS DB by Nucleotide ID:ENST00000395999Re-query CCDS DB by Protein ID:ENSP00000379321
Original member Current member NCBI NM_001144756.2 NP_001138228.1 Accepted alive Link to Nucleotide Sequence:NM_001144756.2Link to Protein Sequence:NP_001138228.1Re-query CCDS DB by Nucleotide ID:NM_001144756Re-query CCDS DB by Protein ID:NP_001138228Link to BLAST:NP_001138228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138228.1 423 Q9Y5X5-3 423 100% 0 0

Chromosomal Locations for CCDS 47072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 72069022 72069023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 72128585 72128919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 72138040 72138139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 72146978 72147812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGTTCATCATGAATGAGAAATGGGACACAAACTCTTCAGAAAACTGGCATCCCATCTGGAATGTCAATG
AC
ACAAAGCATCATCTGTACTCAGATATTAATATTACCTATGTGAACTACTATCTTCACCAGCCTCAAGT
G
GCAGCAATCTTCATTATTTCCTACTTTCTGATCTTCTTTTTGTGCATGATGGGAAATACTGTGGTTTGC
TTT
ATTGTAATGAGGAACAAACATATGCACACAGTCACTAATCTCTTCATCTTAAACCTGGCCATAAGTG
AT
TTACTAGTTGGCATATTCTGCATGCCTATAACACTGCTGGACAATATTATAGCAGGATGGCCATTTGG
A
AACACGATGTGCAAGATCAGTGGATTGGTCCAGGGAATATCTGTCGCAGCTTCAGTCTTTACGTTAGTT
GCA
ATTGCTGTAGATAGGTTCCAGTGTGTGGTCTACCCTTTTAAACCAAAGCTCACTATCAAGACAGCGT
TT
GTCATTATTATGATCATCTGGGTCCTAGCCATCACCATTATGTCTCCATCTGCAGTAATGTTACATGT
G
CAAGAAGAAAAATATTACCGAGTGAGACTCAACTCCCAGAATAAAACCAGTCCAGTCTACTGGTGCCGG
GAA
GACTGGCCAAATCAGGAAATGAGGAAGATCTACACCACTGTGCTGTTTGCCAACATCTACCTGGCTC
CC
CTCTCCCTCATTGTCATCATGTATGGAAGGATTGGAATTTCACTCTTCAGGGCTGCAGTTCCTCACAC
A
GGCAGGAAGAACCAGGAGCAGTGGCACGTGGTGTCCAGGAAGAAGCAGAAGATCATTAAGATGCTCCTG
ATT
GTGGCCCTGCTTTTTATTCTCTCATGGCTGCCCCTGTGGACTCTAATGATGCTCTCAGACTACGCTG
AC
CTTTCTCCAAATGAACTGCAGATCATCAACATCTACATCTACCCTTTTGCACACTGGCTGGCATTCGG
C
AACAGCAGTGTCAATCCCATCATTTATGGTTTCTTCAACGAGAATTTCCGCCGTGGTTTCCAAGAAGCT
TTC
CAGCTCCAGCTCTGCCAAAAAAGAGCAAAGCCTATGGAAGCTTATGCCCTAAAAGCTAAAAGCCATG
TG
CTCATAAACACATCTAATCAGCTTGTCCAGGAATCTACATTTCAAAACCCTCATGGGGAAACCTTGCT
T
TATAGGAAAAGTGCTGAAAAACCCCAACAGGAATTAGTGATGGAAGAATTAAAAGAAACTACTAACAGC
AGT
GAGATTTAA


Translation (423 aa):
MFIMNEKWDTNSSENWHPIWNVNDTKHHLYSDINITYVNYYLHQPQVAAIFIISYFLIFFLCMMGNTVVC
F
IVMRNKHMHTVTNLFILNLAISDLLVGIFCMPITLLDNIIA
GWPFGNTMCKISGLVQGISVAASVFTLV
A
IAVD
RFQCVVYPFKPKLTIKTAFVIIMIIWVLAITIMSPSAVMLHVQEEKYYRVRLNSQNKTSPVYWCR
E
DWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGRKNQEQWHVVSRKKQKIIKMLL
I
VALLFILSWLPLWTLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQEA
F
QLQLCQKRAKPMEAYALKAKSHVLINTSNQLVQESTFQNPHGETLLYRKSAEKPQQELVMEELKETTNS
S
EI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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