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Report for CCDS47215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47215.1 Public Homo sapiens 5 ZSWIM6 24 110 108 CCDS HistoryNCBI Gene:57688Re-query CCDS DB by CCDS ID:47215.1Re-query CCDS DB by GeneID:57688See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 47215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252744.6 ENSP00000252744.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252744.6Link to Ensembl Protein Viewer:ENSP00000252744.5Re-query CCDS DB by Nucleotide ID:ENST00000252744Re-query CCDS DB by Protein ID:ENSP00000252744
Original member Current member NCBI NM_020928.2 NP_065979.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020928.2Link to Protein Sequence:NP_065979.1Re-query CCDS DB by Nucleotide ID:NM_020928Re-query CCDS DB by Protein ID:NP_065979Link to BLAST:NP_065979.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065979.1 1215 Q9HCJ5 1215 100% 0 0

Chromosomal Locations for CCDS 47215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 61332273 61332948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61472681 61473037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61490786 61490934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61494260 61494410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61521263 61521442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61525800 61525976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61526250 61526396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61530052 61530198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61531465 61531725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61535484 61535619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61538814 61538971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61539596 61539759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61541884 61541965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 61543455 61544317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3648 nt):
ATGGCGGAGCGCGGACAGCAGCCTCCTCCCGCGAAACGGCTTTGCTGCCGGCCGGGCGGCGGCGGCGGCG
GCGGGGGCAGCAGCGGCGGCGGCGGCGGCGCGGGTGGCGGCTACAGCTCTGCCTGTCGGCCAGGCCCGCG
GGCGGGTGGCGCGGCGGCGGCGGCGGCGTGCGGGGGCGGCGCGGCGCTGGGGTTGCTGCCGCCGGGCAAG
ACCCAGAGCCCCGAGTCGCTGCTGGACATCGCGGCGCGCAGGGTGGCGGAGAAGTGGCCGTTCCAGCGCG
TGGAGGAGCGCTTTGAGCGCATCCCGGAGCCGGTGCAGCGCCGCATAGTCTATTGGTCCTTCCCCCGCAG
CGAGCGGGAGATCTGCATGTACTCGTCCTTCAACACCGGCGGCGGCGCCGCGGGCGGCCCCGGCGACGAC
AGCGGTGGCGGCGGCGGCGCGGGCGGCGGCGGCGGCGGCGGCTCCTCGTCTTCCCCGGCCGCAACCTCGG
CGGCCGCAACCTCGGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGGGGCCGG
GGCCCCGTCGGTGGGGGCTGCCGGGGCGGCGGACGGCGGCGACGAGACGCGGCTGCCTTTCCGCCGGGGC
ATCGCGCTGTTGGAAAGCGGCTGCGTAGACAACGTCCTGCAAGTCGGTTTCCACTTGAGCGGCACAGTGA
CAGAACCTGCAATACAATCGGAGCCAGAAACTGTTTGCAACGTGGCCATCAGCTTTGATCGTTGCAAGAT
TACCTCAGTGACCTGCAGCTGTGGAAACAAGGACATATTTTATTGTGCCCATGTTGTGGCACTGTCTTTA
TACCGCATCCGCAAGCCAGATCAGGTCAAACTGCATCTTCCTATTTCAGAGACTCTCTTTCAAATGAATA
GAGACCAACTGCAAAAGTTTGTACAGTATTTGATCACAGTGCACCACACAGAAGTTTTGCCAACTGCTCA
AAAATTAGCAGATGAAATTCTTTCCCAAAATTCAGAAATCAACCAAGTTCATGGTGCTCCTGATCCAACA
GCAGGTGCTAGTATAGATGATGAAAACTGCTGGCACTTAGATGAAGAGCAGGTTCAAGAACAGGTTAAAC
TGTTCCTTTCCCAGGGCGGGTACCACGGATCAGGGAAGCAGCTTAATTTGCTCTTTGCAAAGGTGCGGGA
GATGTTAAAGATGAGGGACTCCAATGGGGCCCGCATGTTGACCTTGATAACAGAGCAATTCATGGCTGAC
CCTCGCCTGTCACTTTGGCGGCAACAAGGCACTGCAATGACTGACAAATACAGGCAGCTCTGGGATGAGC
TGGGTGCTCTGTGGATGTGTATAGTTTTAAACCCCCACTGCAAGTTGGAGCAAAAGGCCAGTTGGCTAAA
ACAGCTGAAGAAATGGAATAGTGTTGATGTCTGTCCATGGGAAGATGGAAATCATGGCAGTGAATTACCC
AACTTAACCAATGCTCTGCCTCAGGGTGCAAATGCCAACCAAGATTCATCGAACAGGCCACATCGGACAG
TGTTCACCCGAGCCATCGAGGCATGCGATCTCCACTGGCAGGATAGCCACTTGCAGCACATTATCAGCAG
TGACCTATACACCAACTACTGTTACCATGACGACACTGAAAACTCCCTCTTCGACTCCCGCGGGTGGCCC
CTCTGGCATGAACATGTTCCTACAGCCTGTGCAAGAGTGGACGCATTACGTTCTCATGGGTACCCCAGAG
AAGCACTGAGACTAGCAATAGCTATTGTTAATACATTAAGACGACAGCAGCAGAAACAGTTGGAAATGTT
CCGAACCCAAAAAAAAGAGCTACCCCATAAAAACATAACCTCGATAACCAATCTGGAGGGCTGGGTTGGA
CATCCCCTGGACCCTGTGGGCACTCTCTTCAGTAGCCTTATGGAAGCCTGCCGCATTGATGATGAGAACC
TCTCTGGGTTCTCAGATTTTACAGAGAATATGGGACAGTGCAAGTCTCTGGAATACCAGCATCTACCTGC
ACACAAATTCTTAGAAGAAGGGGAATCCTATTTAACGCTGGCTGTGGAAGTAGCCCTGATAGGGCTAGGA
CAGCAGCGTATCATGCCTGATGGGCTGTACACACAAGAGAAAGTTTGCCGGAATGAGGAGCAGCTCATTT
CTAAGCTTCAGGAAATTGAATTGGATGACACACTGGTGAAAATTTTTCGCAAGCAAGCAGTCTTCCTATT
AGAAGCCGGACCATATAGTGGTTTAGGTGAAATAATCCATCGGGAGAGCGTTCCAATGCACACATTTGCC
AAGTATCTCTTCACCTCTCTCCTACCTCACGATGCTGAATTGGCATACAAAATTGCACTGAGAGCAATGC
GGTTACTAGTATTGGAATCTACTGCTCCATCAGGAGACCTCACCCGCCCACACCACATTGCATCAGTTGT
TCCCAACCGCTACCCTCGCTGGTTCACTCTAAGCCACATTGAGTCCCAGCAGTGTGAGCTGGCATCCACC
ATGCTAACTGCAGCCAAAGGCGATGTTCGGAGGCTGGAAACAGTATTAGAATCCATCCAGAAAAACATTC
ACTCCTCATCACACATCTTCAAGCTTGCCCAAGATGCATTTAAAATAGCAACTCTCATGGACAGTTTGCC
AGACATCACTCTTTTGAAAGTGTCTCTGGAGCTGGGCCTGCAGGTTATGCGAATGACACTGTCAACCTTA
AATTGGCGACGGCGGGAGATGGTGAGGTGGCTGGTAACGTGTGCTACTGAAGTCGGGGTTTATGCCCTGG
ACAGCATCATGCAGACCTGGTTTACACTCTTTACTCCCACCGAGGCCACAAGTATAGTTGCAACTACCGT
GATGTCCAACAGCACCATCGTCCGCCTCCACCTGGACTGCCACCAGCAGGAAAAGCTGGCCAGCAGCGCC
CGGACACTTGCACTGCAGTGTGCCATGAAGGATCCACAGAACTGTGCCCTCTCTGCGCTAACCCTTTGTG
AAAAGGATCACATAGCTTTTGAGACGGCGTACCAAATTGTTCTCGACGCTGCTACGACTGGCATGAGCTA
TACACAGCTCTTTACAATAGCACGGTACATGGAGCACCGCGGGTACCCCATGAGGGCCTACAAGCTGGCC
ACCCTGGCCATGACCCATCTCAACCTGAGCTACAATCAGGACACACACCCTGCCATTAATGATGTTTTGT
GGGCCTGTGCGCTTAGCCACTCCCTTGGTAAAAATGAGCTTGCAGCTATAATACCTCTGGTGGTCAAGAG
TGTCAAGTGTGCAACGGTACTGTCAGACATTTTGCGCAGATGCACTCTGACCACTCCTGGCATGGTGGGA
CTTCATGGGAGGAGGAACTCTGGTAAGCTCATGTCACTGGACAAAGCCCCCTTGAGGCAACTCTTGGATG
CCACGATCGGGGCCTACATCAACACAACGCACTCACGGCTCACACACATCAGTCCTCGGCACTATAGTGA
GTTTATAGAGTTCCTCAGCAAAGCCCGAGAGACCTTCTTAATGGCGCATGATGGACACATTCAGTTTACA
CAGTTTATTGACAACCTGAAACAAATCTACAAAGGCAAAAAGAAACTGATGATGTTGGTTCGGGAGAGGT
TTGGTTGA

Translation (1215 aa):
MAERGQQPPPAKRLCCRPGGGGGGGGSSGGGGGAGGGYSSACRPGPRAGGAAAAAACGGGAALGLLPPGK
TQSPESLLDIAARRVAEKWPFQRVEERFERIPEPVQRRIVYWSFPRSEREICMYSSFNTGGGAAGGPGDD
SGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADGGDETRLPFRRG
IALLESGCVDNVLQVGFHLSGTVTEPAIQSEPETVCNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSL
YRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEINQVHGAPDPT
AGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITEQFMAD
PRLSLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKASWLKQLKKWNSVDVCPWEDGNHGSELP
NLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLQHIISSDLYTNYCYHDDTENSLFDSRGWP
LWHEHVPTACARVDALRSHGYPREALRLAIAIVNTLRRQQQKQLEMFRTQKKELPHKNITSITNLEGWVG
HPLDPVGTLFSSLMEACRIDDENLSGFSDFTENMGQCKSLEYQHLPAHKFLEEGESYLTLAVEVALIGLG
QQRIMPDGLYTQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEIIHRESVPMHTFA
KYLFTSLLPHDAELAYKIALRAMRLLVLESTAPSGDLTRPHHIASVVPNRYPRWFTLSHIESQQCELAST
MLTAAKGDVRRLETVLESIQKNIHSSSHIFKLAQDAFKIATLMDSLPDITLLKVSLELGLQVMRMTLSTL
NWRRREMVRWLVTCATEVGVYALDSIMQTWFTLFTPTEATSIVATTVMSNSTIVRLHLDCHQQEKLASSA
RTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYTQLFTIARYMEHRGYPMRAYKLA
TLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVG
LHGRRNSGKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYSEFIEFLSKARETFLMAHDGHIQFT
QFIDNLKQIYKGKKKLMMLVRERFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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