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Report for CCDS47239.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47239.2 Public Homo sapiens 5 MTX3 24 110 108 CCDS HistoryNCBI Gene:345778Re-query CCDS DB by CCDS ID:47239.2Re-query CCDS DB by GeneID:345778See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 47239.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47239.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509852.6 ENSP00000423302.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509852.6Link to Ensembl Protein Viewer:ENSP00000423302.1Re-query CCDS DB by Nucleotide ID:ENST00000509852Re-query CCDS DB by Protein ID:ENSP00000423302
Original member Current member NCBI NM_001010891.5 NP_001010891.4 Accepted alive Link to Nucleotide Sequence:NM_001010891.5Link to Protein Sequence:NP_001010891.4Re-query CCDS DB by Nucleotide ID:NM_001010891Re-query CCDS DB by Protein ID:NP_001010891Link to BLAST:NP_001010891.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010891.4 248 Q5HYI7-4 248 100% 0 0

Chromosomal Locations for CCDS 47239.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 79983787 79983794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79986950 79987107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79988239 79988315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79988462 79988644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79989152 79989244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79990160 79990236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79990594 79990663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79991158 79991238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGCGGCCCCCTTGGAACTCAGTTGCTGGGGAGGCGGCTGGGGACTCCCATCGGTTCACAGCGAGTCCC
TGGTGGTGATGGCTTATGCCAAATTTTCTGGTGCACCCTTGAAAGTCAATGTGATAGATAACACCTGGAG
AGGTTCAAGAGGCGATGTACCAATTTTGACAACTGAAGACGACATGGTTTCTCAGCCAGCAAAAATACTA
AACTTTTTAAGAAAACAGAAATATAATGCTGATTATGAACTCTCAGCAAAACAAGGGGCAGATACATTGG
CTTATATTGCTCTCCTCGAAGAGAAGCTTCTCCCTGCAGTGCTTCACACATTCTGGGTTGAGAGTGACAA
TTACTTTACTGTGACAAAGCCATGGTTTGCTTCACAAATTCCTTTTCCTTTGAGTTTGATCCTGCCTGGA
AGAATGTCTAAGGGAGCACTGAATAGGATTCTCCTGACCAGAGGACAGCCTCCCCTCTACCACCTCCGAG
AAGTGGAAGCACAGATATACAGAGATGCCAAGGAGTGCCTAAATCTTCTATCAAACAGATTGGGAACATC
TCAGTTTTTCTTTGGAGATACGCCTTCTACCTTGGATGCCTATGTTTTTGGTTTTCTTGCACCTCTTTAC
AAAGTACGGTTTCCTAAAGTTCAGCTACAAGAACATCTGAAACAGCTCTCCAACCTCTGTCGCTTTTGTG
ATGACATCCTGAGCAGTTATTTTAGGCTTAGTCTTGGAGATGGATGA

Translation (248 aa):
MAAPLELSCWGGGWGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPILTTEDDMVSQPAKIL
NFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYFTVTKPWFASQIPFPLSLILPG
RMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNLLSNRLGTSQFFFGDTPSTLDAYVFGFLAPLY
KVRFPKVQLQEHLKQLSNLCRFCDDILSSYFRLSLGDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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