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Report for CCDS47245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47245.1 Public Homo sapiens 5 MEF2C 24 110 108 CCDS HistoryNCBI Gene:4208Re-query CCDS DB by CCDS ID:47245.1Re-query CCDS DB by GeneID:4208See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437473.6 ENSP00000396219.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437473.6Link to Ensembl Protein Viewer:ENSP00000396219.2Re-query CCDS DB by Nucleotide ID:ENST00000437473Re-query CCDS DB by Protein ID:ENSP00000396219
Original member Current member EBI ENST00000504921.7 ENSP00000421925.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504921.7Link to Ensembl Protein Viewer:ENSP00000421925.5Re-query CCDS DB by Nucleotide ID:ENST00000504921Re-query CCDS DB by Protein ID:ENSP00000421925
Original member Current member EBI ENST00000636294.1 ENSP00000490473.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636294.1Link to Ensembl Protein Viewer:ENSP00000490473.1Re-query CCDS DB by Nucleotide ID:ENST00000636294Re-query CCDS DB by Protein ID:ENSP00000490473
Original member Current member NCBI NM_001193350.2 NP_001180279.1 Accepted alive Link to Nucleotide Sequence:NM_001193350.2Link to Protein Sequence:NP_001180279.1Re-query CCDS DB by Nucleotide ID:NM_001193350Re-query CCDS DB by Protein ID:NP_001180279Link to BLAST:NP_001180279.1
Original member Current member NCBI NM_001364329.2 NP_001351258.1 Accepted alive Link to Nucleotide Sequence:NM_001364329.2Link to Protein Sequence:NP_001351258.1Re-query CCDS DB by Nucleotide ID:NM_001364329Re-query CCDS DB by Protein ID:NP_001351258Link to BLAST:NP_001351258.1
Original member Current member NCBI NM_001364330.2 NP_001351259.1 Accepted alive Link to Nucleotide Sequence:NM_001364330.2Link to Protein Sequence:NP_001351259.1Re-query CCDS DB by Nucleotide ID:NM_001364330Re-query CCDS DB by Protein ID:NP_001351259Link to BLAST:NP_001351259.1
Original member Current member NCBI NM_001364331.2 NP_001351260.1 Accepted alive Link to Nucleotide Sequence:NM_001364331.2Link to Protein Sequence:NP_001351260.1Re-query CCDS DB by Nucleotide ID:NM_001364331Re-query CCDS DB by Protein ID:NP_001351260Link to BLAST:NP_001351260.1
Original member Current member NCBI NM_002397.5 NP_002388.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002397.5Link to Protein Sequence:NP_002388.2Re-query CCDS DB by Nucleotide ID:NM_002397Re-query CCDS DB by Protein ID:NP_002388Link to BLAST:NP_002388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180279.1 473 Q06413-1 473 100% 0 0
NP_001351258.1 473 Q06413-1 473 100% 0 0
NP_001351259.1 473 Q06413-1 473 100% 0 0
NP_001351260.1 473 Q06413-1 473 100% 0 0
NP_002388.2 473 Q06413-1 473 100% 0 0

Chromosomal Locations for CCDS 47245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88722604 88722925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88728493 88728628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88729218 88729347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88730211 88730234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88731729 88731901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88749070 88749117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88751857 88752043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88761185 88761328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88804598 88804801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88823735 88823788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGGGAGAAAAAAGATTCAGATTACGAGGATTATGGATGAACGTAACAGACAGGTGACATTTACAAAGA
GGAAATTTGGGTTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGTGACTGTGAGATTGCGCTGATCAT
CTTCAACAGCACCAACAAGCTGTTCCAGTATGCCAGCACCGACATGGACAAAGTGCTTCTCAAGTACACG
GAGTACAACGAGCCGCATGAGAGCCGGACAAACTCAGACATCGTGGAGACGTTGAGAAAGAAGGGCCTTA
ATGGCTGTGACAGCCCAGACCCCGATGCGGACGATTCCGTAGGTCACAGCCCTGAGTCTGAGGACAAGTA
CAGGAAAATTAACGAAGATATTGATCTAATGATCAGCAGGCAAAGATTGTGTGCTGTTCCACCTCCCAAC
TTCGAGATGCCAGTCTCCATCCCAGTGTCCAGCCACAACAGTTTGGTGTACAGCAACCCTGTCAGCTCAC
TGGGAAACCCCAACCTATTGCCACTGGCTCACCCTTCTCTGCAGAGGAATAGTATGTCTCCTGGTGTAAC
ACATCGACCTCCAAGTGCAGGTAACACAGGTGGTCTGATGGGTGGAGACCTCACGTCTGGTGCAGGCACC
AGTGCAGGGAACGGGTATGGCAATCCCCGAAACTCACCAGGTCTGCTGGTCTCACCTGGTAACTTGAACA
AGAATATGCAAGCAAAATCTCCTCCCCCAATGAATTTAGGAATGAATAACCGTAAACCAGATCTCCGAGT
TCTTATTCCACCAGGCAGCAAGAATACGATGCCATCAGTGTCTGAGGATGTCGACCTGCTTTTGAATCAA
AGGATAAATAACTCCCAGTCGGCTCAGTCATTGGCTACCCCAGTGGTTTCCGTAGCAACTCCTACTTTAC
CAGGACAAGGAATGGGAGGATATCCATCAGCCATTTCAACAACATATGGTACCGAGTACTCTCTGAGTAG
TGCAGACCTGTCATCTCTGTCTGGGTTTAACACCGCCAGCGCTCTTCACCTTGGTTCAGTAACTGGCTGG
CAACAGCAACACCTACATAACATGCCACCATCTGCCCTCAGTCAGTTGGGAGCTTGCACTAGCACTCATT
TATCTCAGAGTTCAAATCTCTCCCTGCCTTCTACTCAAAGCCTCAACATCAAGTCAGAACCTGTTTCTCC
TCCTAGAGACCGTACCACCACCCCTTCGAGATACCCACAACACACGCGCCACGAGGCGGGGAGATCTCCT
GTTGACAGCTTGAGCAGCTGTAGCAGTTCGTACGACGGGAGCGACCGAGAGGATCACCGGAACGAATTCC
ACTCCCCCATTGGACTCACCAGACCTTCGCCGGACGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACT
TTCTGAAGGATGGGCAACATGA

Translation (473 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPN
FEMPVSIPVSSHNSLVYSNPVSSLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGT
SAGNGYGNPRNSPGLLVSPGNLNKNMQAKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQ
RINNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGW
QQQHLHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTTPSRYPQHTRHEAGRSP
VDSLSSCSSSYDGSDREDHRNEFHSPIGLTRPSPDERESPSVKRMRLSEGWAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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