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Report for CCDS47275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47275.1 Public Homo sapiens 5 UBE2D2 24 110 108 CCDS HistoryNCBI Gene:7322Re-query CCDS DB by CCDS ID:47275.1Re-query CCDS DB by GeneID:7322See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000505548.5 ENSP00000424941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505548.5Link to Ensembl Protein Viewer:ENSP00000424941.1Re-query CCDS DB by Nucleotide ID:ENST00000505548Re-query CCDS DB by Protein ID:ENSP00000424941
Original member Current member EBI ENST00000511725.5 ENSP00000429613.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511725.5Link to Ensembl Protein Viewer:ENSP00000429613.1Re-query CCDS DB by Nucleotide ID:ENST00000511725Re-query CCDS DB by Protein ID:ENSP00000429613
Original member Current member EBI ENST00000698321.1 ENSP00000513666.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698321.1Link to Ensembl Protein Viewer:ENSP00000513666.1Re-query CCDS DB by Nucleotide ID:ENST00000698321Re-query CCDS DB by Protein ID:ENSP00000513666
Original member Current member EBI ENST00000698322.1 ENSP00000513667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698322.1Link to Ensembl Protein Viewer:ENSP00000513667.1Re-query CCDS DB by Nucleotide ID:ENST00000698322Re-query CCDS DB by Protein ID:ENSP00000513667
Original member Current member NCBI NM_181838.2 NP_862821.1 Accepted alive Link to Nucleotide Sequence:NM_181838.2Link to Protein Sequence:NP_862821.1Re-query CCDS DB by Nucleotide ID:NM_181838Re-query CCDS DB by Protein ID:NP_862821Link to BLAST:NP_862821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862821.1 118 P62837-2 118 100% 0 0

Chromosomal Locations for CCDS 47275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139600435 139600435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139614586 139614617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139614697 139614774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139614861 139614966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139623368 139623461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139626756 139626801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGA
CAATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCC
AAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATT
TCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGA
TTGCTCGGATCTACAAAACAGATAGAGAAAAGTACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGC
GATGTAA

Translation (118 aa):
MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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