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Report for CCDS47292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47292.1 Public Homo sapiens 5 PCDHGA10 24 110 108 CCDS HistoryNCBI Gene:56106Re-query CCDS DB by CCDS ID:47292.1Re-query CCDS DB by GeneID:56106See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398610.3 ENSP00000381611.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398610.3Link to Ensembl Protein Viewer:ENSP00000381611.2Re-query CCDS DB by Nucleotide ID:ENST00000398610Re-query CCDS DB by Protein ID:ENSP00000381611
Original member Current member NCBI NM_018913.3 NP_061736.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018913.3Link to Protein Sequence:NP_061736.1Re-query CCDS DB by Nucleotide ID:NM_018913Re-query CCDS DB by Protein ID:NP_061736Link to BLAST:NP_061736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061736.1 936 Q9Y5H3-1 936 100% 0 0

Chromosomal Locations for CCDS 47292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141413176 141415611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGGCCGCTCAAAGGAATCGCTCAAAGGAATCAAAGGATTGCAGCGGGCTGGTCCTGCTCTGCCTTTTCT
TCGGGATTCCATGGGAGGCTGGAGCCCGGCAGATCTCCTACTCAATTCCTGAGGAATTAGAGAAAGGCTC
TTTCGTGGGCAACATCTCCAAGGACTTGGGTCTGGCGCCCCGGGAGCTGGCGGAGCGCGGAGTCCGCATA
GTCTCCAGAGGTAGGACGCAGCTTTTCTCTCTGAACCCGCGCAGCGGCAGCTTGATCACCGCGGGCAGGA
TAGACCGGGAGGAGCTCTGCGCTCAGAGCGCGCGGTGCGTGGTGAGTTTTAATATCCTTGTGGAAGACAG
GGTGAAACTTTTTGGGATAGAAATAGAAGTAACTGATATCAATGACAATGCTCCAAAATTCCAAGCAGAA
AATCTAGACGTAAAAATTAATGAAAATGTCGCTGCGGGAATGCGTTTTCCTCTCCCGGAAGCTATTGATC
CGGATGTGGGCGTGAACTCCCTGCAGAGCTATCAGCTCAGCCCCAATAAGCACTTCTCCCTAAGAGTTCA
GAGCCGTGCCAATGGCGTCAAGTACCCGGAGCTGGTACTGGAGCACTCCCTAGATCGCGAGGAAGAGGCC
ATTCACCACCTGGTCCTCACCGCCTCCGACGGGGGTGACCCTCTCCGATCTGGCACTGTCCTTGTCAGTG
TGACTGTCTTCGATGCAAATGACAACGCGCCGGTCTTCACCTTGCCAGAATACCGAGTGAGTGTTCCTGA
GAATTTGCCTGTGGGCACTCAGCTGCTGACAGTCACAGCCACCGACAGGGACGAAGGTGCCAATGGAGAA
GTGACATATTCATTCCGAAAATTACCTGACACGCAATTGTTGAAGTTCCAACTAAACAAATATACTGGAG
AAATAAAAATATCAGAAAATCTAGATTATGAAGAAACCGGTTTCTATGAAATAGAAATACAAGCAGAAGA
TGGAGGAGCATATCTTGCAACTGCAAAAGTGTTGATTACAGTAGAAGATGTAAATGACAACAGTCCAGAG
CTGACCATCACGTCTCTATTTAGTCCAGTGACTGAAGATTCACCTCTGGGAACAGTCGTAGCCCTTTTAA
ATGTGCATGATTTAGACTCTGAGCAGAATGGACAGGTAACCTGTTCCATTTTGGCGTATCTACCATTTAA
ATTAGAAAAGTCCATTGACAGTTATTACAGATTGGTGATACACAGAGCCCTTGACAGGGAACAGGTATCC
TCTTACAATATCACAGTGACAGCCACAGATGGGGGAAGTCCTCCTCTATCAACGGAAGCTCACTTTATGC
TACAAGTGGCAGATATCAATGACAACCCACCTACCTTCTCTCAAGTCTCCTACTTTACCTATATCCCAGA
GAACAACGCCAGGGGTGCCTCCATCTTCTCAGTGACAGCGCTGGACCCGGACAGCAAAGAGAATGCCCAG
ATTATTTACTCCCTGGCTGAAGACACCATCCAGGGGGTACCTCTGTCCTCATACATATCCATCAACTCAG
ACACTGGCGTCCTGTATGCACTCAGATCCTTCGACTATGAGCAGTTTCATGAGCTACAGATGCAGGTGAC
AGCCAGCGACAGCGGGGATCCTCCACTCAGCAGCAACGTGTCGTTGAGCCTGTTTGTGCTGGACCAGAAC
GACAATGCGCCCGAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACAGGCGTGGAGCTGGCGCCCC
GCTCCGCAGAGCCCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCCGGCCAGAACGCCTG
GCTGTCCTACCGTCTGCTCAAGGCCAGCGAGCCGGGACTCTTCGCGGTGGGGGAGCACACGGGCGAGGTG
CGCACGGCGCGAGCCCTGCTGGACAGAGACGCGCTCAAGCAAAGCCTCGTAGTGGCCGTCCAGGACCACG
GCCAGCCCCCTCTCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGCATCCCCCAAGTCCTGGC
GGACCTCGGCAGCTTCGAGTCTCCAGCTAACTCTGAAACCTCAGACCTCACTCTGTACCTGGTGGTAGCG
GTGGCCGCGGTCTCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCACAGGCTGCGGCGCTGGC
ACAAGTCACGCCTGCTGCAGGCTTCAGGAGGCGGCTTGACAGGTGTGTCCGGCTCGCACTTTGTGGGCGT
GGACGGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCTCTCACCGCGGACTCGCGAAAGAGT
CACCTGATCTTCCCCCAGCCCAATTATGCGGACACGCTCATCAGCCAGGAGAGCTGTGAGAAAAACGATC
CTTTGTCTTTGTTAGATGATTCGAAGTTTCCTATAGAGGATACCCCATTGGTTCCACAAGCCCCGCCCAA
CACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGC
ACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTG
CTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTT
CACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAAC
GCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGG
AGAAGAAGTAA

Translation (936 aa):
MAAQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRI
VSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAE
NLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEA
IHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGE
VTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPE
LTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVS
SYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQ
IIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQN
DNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEV
RTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFESPANSETSDLTLYLVVA
VAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKS
HLIFPQPNYADTLISQESCEKNDPLSLLDDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTG
TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
AAGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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