NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47295.1 Public Homo sapiens 5 FCHSD1 24 110 108 CCDS HistoryNCBI Gene:89848Re-query CCDS DB by CCDS ID:47295.1Re-query CCDS DB by GeneID:89848See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435817.7 ENSP00000399259.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435817.7Link to Ensembl Protein Viewer:ENSP00000399259.2Re-query CCDS DB by Nucleotide ID:ENST00000435817Re-query CCDS DB by Protein ID:ENSP00000399259
Original member Current member NCBI NM_033449.3 NP_258260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033449.3Link to Protein Sequence:NP_258260.1Re-query CCDS DB by Nucleotide ID:NM_033449Re-query CCDS DB by Protein ID:NP_258260Link to BLAST:NP_258260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_258260.1 690 Q86WN1-1 690 100% 0 0

Chromosomal Locations for CCDS 47295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141641498 141641563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141641702 141641757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141643001 141643088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141644218 141644438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141644573 141644690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141644859 141644942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141645020 141645148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141645771 141645932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141646087 141646191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141646603 141646722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141647135 141647230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141647398 141647520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141647968 141648096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141648957 141649020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141649172 141649308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141649395 141649536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141649887 141649954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141650359 141650404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141651020 141651117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141651348 141651368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGCAGCCGCCGCCCCGAAAAGTGAAGCCGGCCCAGGAGGTGAAGCTTCGCTTCCTGGAACAGCTGAGCA
TCCTTCAGACCTGGCAGCAGAGGGAGGCGGATCTGCTGGAGGACATCAGATCCTACAGCAAGCAGAGGGC
AGCCATTGAACGGGAGTATGGGCAGGCACTCCAGAAACTGGCTGGCCCATTCCTGAAGAGGGAAGGGCAC
CGGAGCGGTGAGATGGACAGCAGGGGCAGGACAGTGTTCGGTGCCTGGCGCTGCCTGCTGGATGCCACCG
TGGCTGGGGGCCAAACCCGACTCCAGGCGTCTGACCGATACCGTGACCTAGCAGGGGGTACAGGGCGGAG
CGCCAAGGAGCAGGTGCTTAGGAAGGGAACAGAGAACCTCCAGAGGGCGCAGGCTGAGGTGCTGCAGTCT
GTCCGGGAGCTGAGCCGAAGTCGGAAGCTGTATGGGCAGCGGGAACGTGTGTGGGCCTTGGCACAGGAGA
AGGCGGCTGATGTCCAGGCCAGGCTAAACCGAAGTGACCATGGGATCTTCCACTCTCGGACCAGTCTCCA
GAAACTGAGCACCAAGCTGTCCGCCCAGTCAGCCCAGTACTCCCAGCAGCTGCAAGCAGCCCGCAATGAG
TACCTGCTTAACTTGGTGGCTACCAATGCCCACCTCGACCATTACTACCAGGAGGAACTGCCAGCTCTGC
TCAAGGCCCTGGTCAGTGAGCTGTCAGAGCACTTGAGGGACCCCCTGACCTCCCTGAGCCACACTGAGCT
GGAAGCCGCAGAGGTCATCCTGGAGCATGCCCACCGCGGGGAGCAGACAACCTCCCAGGTAAGCTGGGAG
CAAGACCTGAAGCTGTTTCTTCAGGAGCCTGGTGTATTTTCCCCCACCCCACCTCAGCAGTTTCAGCCAG
CAGGGACTGATCAGGTGTGTGTCCTGGAGTGGGGAGCAGAAGGCGTGGCTGGCAAGAGTGGCCTGGAGAA
AGAGGTTCAGCGCTTGACCAGCCGAGCTGCCCGTGACTACAAGATCCAGAACCATGGGCATCGGGTACTG
CAACGACTGGAGCAGAGGCGGCAGCAGGCTTCAGAGCGGGAGGCTCCAAGCATAGAACAGAGGTTACAGG
AAGTGCGAGAGAGCATCCGCCGGGCACAGGTGAGCCAGGTGAAGGGGGCTGCCCGGCTGGCCCTGCTGCA
GGGGGCTGGCTTAGATGTGGAGCGCTGGCTGAAGCCAGCCATGACCCAGGCCCAGGATGAGGTGGAGCAG
GAGCGGCGGCTCAGTGAGGCTCGGCTGTCCCAGAGGGACCTCTCTCCAACCGCTGAGGATGCTGAGCTTT
CTGACTTTGAGGAATGTGAGGAGACGGGAGAGCTCTTTGAGGAGCCTGCCCCCCAAGCCCTGGCCACGAG
GGCCCTCCCCTGCCCTGCACACGTGGTATTTCGCTATCAGGCAGGGCGTGAGGATGAGCTGACAATCACG
GAGGGTGAGTGGCTGGAGGTCATAGAGGAGGGAGATGCTGACGAATGGGTCAAGGCTCGGAACCAGCACG
GCGAGGTAGGCTTTGTCCCTGAGCGATATCTCAACTTCCCGGACCTCTCCCTCCCAGAGAGCAGCCAAGA
CAGTGACAATCCCTGCGGGGCAGAGCCCACAGCATTCCTGGCACAGGCCCTGTACAGCTACACCGGACAG
AGTGCAGAGGAGCTGAGCTTCCCTGAGGGGGCACTCATCCGTCTGCTGCCCCGGGCCCAAGATGGAGTAG
ATGACGGCTTCTGGAGGGGAGAATTTGGGGGCCGTGTTGGGGTCTTCCCCTCCCTGCTGGTGGAAGAGCT
GCTTGGCCCCCCAGGGCCACCTGAACTCTCTGACCCTGAACAGATGCTGCCGTCCCCTTCTCCTCCCAGC
TTCTCCCCACCTGCACCTACCTCTGTGTTGGATGGGCCCCCTGCACCTGTCCTGCCTGGGGACAAAGCCC
TGGACTTCCCTGGGTTCCTGGACATGATGGCACCTCGACTCAGGCCGATGCGTCCACCACCTCCCCCGCC
GGCTAAAGCCCCGGATCCTGGCCACCCAGATCCCCTCACCTGA

Translation (690 aa):
MQPPPRKVKPAQEVKLRFLEQLSILQTWQQREADLLEDIRSYSKQRAAIEREYGQALQKLAGPFLKREGH
RSGEMDSRGRTVFGAWRCLLDATVAGGQTRLQASDRYRDLAGGTGRSAKEQVLRKGTENLQRAQAEVLQS
VRELSRSRKLYGQRERVWALAQEKAADVQARLNRSDHGIFHSRTSLQKLSTKLSAQSAQYSQQLQAARNE
YLLNLVATNAHLDHYYQEELPALLKALVSELSEHLRDPLTSLSHTELEAAEVILEHAHRGEQTTSQVSWE
QDLKLFLQEPGVFSPTPPQQFQPAGTDQVCVLEWGAEGVAGKSGLEKEVQRLTSRAARDYKIQNHGHRVL
QRLEQRRQQASEREAPSIEQRLQEVRESIRRAQVSQVKGAARLALLQGAGLDVERWLKPAMTQAQDEVEQ
ERRLSEARLSQRDLSPTAEDAELSDFEECEETGELFEEPAPQALATRALPCPAHVVFRYQAGREDELTIT
EGEWLEVIEEGDADEWVKARNQHGEVGFVPERYLNFPDLSLPESSQDSDNPCGAEPTAFLAQALYSYTGQ
SAEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPSLLVEELLGPPGPPELSDPEQMLPSPSPPS
FSPPAPTSVLDGPPAPVLPGDKALDFPGFLDMMAPRLRPMRPPPPPPAKAPDPGHPDPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH