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Report for CCDS47350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47350.1 Public Homo sapiens 5 DOK3 24 110 108 CCDS HistoryNCBI Gene:79930Re-query CCDS DB by CCDS ID:47350.1Re-query CCDS DB by GeneID:79930See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47350.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312943.10 ENSP00000325174.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312943.10Link to Ensembl Protein Viewer:ENSP00000325174.6Re-query CCDS DB by Nucleotide ID:ENST00000312943Re-query CCDS DB by Protein ID:ENSP00000325174
Original member Current member NCBI NM_001144875.2 NP_001138347.1 Accepted alive Link to Nucleotide Sequence:NM_001144875.2Link to Protein Sequence:NP_001138347.1Re-query CCDS DB by Nucleotide ID:NM_001144875Re-query CCDS DB by Protein ID:NP_001138347Link to BLAST:NP_001138347.1
Original member Current member NCBI NM_001375798.1 NP_001362727.1 Accepted alive Link to Nucleotide Sequence:NM_001375798.1Link to Protein Sequence:NP_001362727.1Re-query CCDS DB by Nucleotide ID:NM_001375798Re-query CCDS DB by Protein ID:NP_001362727Link to BLAST:NP_001362727.1
Original member Current member NCBI NM_001375799.2 NP_001362728.1 Accepted alive Link to Nucleotide Sequence:NM_001375799.2Link to Protein Sequence:NP_001362728.1Re-query CCDS DB by Nucleotide ID:NM_001375799Re-query CCDS DB by Protein ID:NP_001362728Link to BLAST:NP_001362728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138347.1 330 Q7L591-3 330 100% 0 0
NP_001362727.1 330 Q7L591-3 330 100% 0 0
NP_001362728.1 330 Q7L591-3 330 100% 0 0

Chromosomal Locations for CCDS 47350.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177503045 177503392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177504743 177504915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177505011 177505110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177508237 177508542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177509475 177509540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTCTACCAGCAGCATGTCAAGTTTGGCAAGAAGT
GCTGGCGGAAGGTGTGGGCTCTGCTGTATGCAGGAGGCCCATCAGGCGTGGCACGGCTGGAGAGCTGGGA
GGTCCGGGATGGTGGCCTGGGAGCAGCGGGTGACAGGTCGGCAGGGCCTGGCCGGCGAGGGGAGCGACGG
GTCATCCGCCTGGCTGACTGTGTGTCCGTGCTGCCGGCTGACGGCGAGAGCTGCCCCCGGGACACCGGTG
CCTTCCTGCTCACCACCACCGAGCGAAGCCATCTACTGGCTGCTCAGCACCGCCAGGCCTGGATGGGCCC
CATCTGCCAGCTGGCCTTCCCGGGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAG
AGGGGCCTGGTCCCCATGGAGGAAAACTCCATCTACTCCTCCTGGCAGGAAGTGGGCGAGTTTCCCGTGG
TGGTGCAGAGGACTGAGGCCGCCACCCGCTGCCAGCTGAAGGGGCCGGCCCTGCTGGTGCTGGGCCCAGA
CGCCATCCAGCTGAGGGAGGCCAAGGGCACCCAGGCCCTCTACAGCTGGCCCTACCACTTCCTGCGCAAG
TTCGGCTCCGACAAGATACTTCTGGGAACCCCAGGCGTCAGTCTCCTCATCTGTAAAGGAGAGAGAACCG
ATGACGTATCAGGCATAATCCTTGATGAGAGTTTGCTGCGTGCCTACTCAGTGCCAGGCGCTGGGGGACA
CAGCCGTGTTCAGGACAGCCTTGGTCCTGTTCTCCGGGAGCCGACATTCCAGGGGGAGAGAAGTTTCCTG
AAGACTTCCATGCTGCGTTCCCTCCTCTGCTCCTGCTCCTGGCGCCATCCTAGGAGCCAGCCACGCACGC
AAGCGTCATGCCTCCAGGGCTCTGACTGCCCAGCCCCTCACCGCAACTCCACCTCAGCTGCACACACCCT
TGGCACATCCTGA

Translation (330 aa):
MDPLETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRSAGPGRRGERR
VIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQLAFPGTGEASSGSTDAQSPK
RGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVLGPDAIQLREAKGTQALYSWPYHFLRK
FGSDKILLGTPGVSLLICKGERTDDVSGIILDESLLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFL
KTSMLRSLLCSCSWRHPRSQPRTQASCLQGSDCPAPHRNSTSAAHTLGTS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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