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Report for CCDS47364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47364.1 Public Homo sapiens 6 CDYL 24 110 108 CCDS HistoryNCBI Gene:9425Re-query CCDS DB by CCDS ID:47364.1Re-query CCDS DB by GeneID:9425See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47364.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343762.5 ENSP00000340908.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343762.5Link to Ensembl Protein Viewer:ENSP00000340908.5Re-query CCDS DB by Nucleotide ID:ENST00000343762Re-query CCDS DB by Protein ID:ENSP00000340908
Original member Current member EBI ENST00000449732.6 ENSP00000394076.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449732.6Link to Ensembl Protein Viewer:ENSP00000394076.2Re-query CCDS DB by Nucleotide ID:ENST00000449732Re-query CCDS DB by Protein ID:ENSP00000394076
Original member Current member NCBI NM_001143970.2 NP_001137442.1 Accepted alive Link to Nucleotide Sequence:NM_001143970.2Link to Protein Sequence:NP_001137442.1Re-query CCDS DB by Nucleotide ID:NM_001143970Re-query CCDS DB by Protein ID:NP_001137442Link to BLAST:NP_001137442.1
Original member Current member NCBI NM_001143971.2 NP_001137443.1 Accepted alive Link to Nucleotide Sequence:NM_001143971.2Link to Protein Sequence:NP_001137443.1Re-query CCDS DB by Nucleotide ID:NM_001143971Re-query CCDS DB by Protein ID:NP_001137443Link to BLAST:NP_001137443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137442.1 412 Q9Y232-4 412 100% 0 0
NP_001137443.1 412 Q9Y232-4 412 100% 0 0

Chromosomal Locations for CCDS 47364.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4892085 4892379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4935515 4935771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4937565 4937737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4943546 4943756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4952266 4952409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4953898 4954056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGACCTAGCGAAGTCAGGTATCAAGATCCTCGTGCCTAAAAGCCCCGTTAAGAGCAGGACCGCAGTGG
ACGGCTTTCAGAGCGAGAGCCCTGAGAAACTGGACCCCGTCGAGCAGGGTCAGGAGGACACAGTGGCACC
CGAAGTGGCAGCGGAAAAGCCGGTCGGAGCTTTATTGGGCCCCGGTGCCGAGAGGGCCAGGATGGGGAGC
AGGCCCAGGATACACCCACTAGTGCCTCAGGTGCCCGGCCCTGTGACTGCAGCCATGGCCACAGGCTTAG
CTGTTAACGGGAAAGGTACATCTCCGTTCATGGATGCATTAACAGCCAATGGGACAACCAACATACAGAC
ATCTGTTACAGGAGTGACTGCCAGCAAAAGGAAATTTATTGACGACAGAAGAGACCAGCCTTTTGACAAG
CGATTGCGTTTCAGCGTGAGGCAAACAGAAAGTGCCTACAGATACAGAGATATTGTGGTCAGGAAGCAGG
ATGGCTTCACCCACATCTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATCCAGAGGTAATGAG
AGAAGTCCAGAGTGCTCTGAGCACGGCCGCTGCCGATGACAGCAAGCTGGTACTGCTCAGCGCCGTTGGC
AGCGTCTTCTGTTGTGGACTTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGGAAAAGAGAAA
GCACTAAAATGGCAGAAGCTATCAGAAACTTCGTGAATACTTTCATTCAATTTAAGAAGCCCATTATTGT
AGCAGTCAATGGCCCAGCCATTGGTCTAGGAGCATCTATATTGCCTCTTTGCGATGTGGTTTGGGCTAAT
GAAAAGGCTTGGTTTCAAACACCCTATACCACCTTCGGACAGAGTCCAGATGGCTGTTCTACCGTTATGT
TTCCCAAGATAATGGGAGGAGCATCTGCAAACGAGATGCTGCTCAGTGGACGGAAGCTGACAGCGCAGGA
GGCGTGTGGCAAGGGCCTGGTCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTGATGGTTCGC
ATTAAGGAGCTTGCCTCGTGCAATCCAGTTGTGCTTGAGGAATCCAAAGCCCTCGTGCGCTGCAACATGA
AGATGGAGCTGGAGCAGGCCAACGAGAGGGAGTGTGAGGTGCTGAAGAAAATCTGGGGCTCGGCCCAGGG
GATGGACTCCATGTTAAAGTACTTGCAGAGGAAGATCGATGAGTTCTGA

Translation (412 aa):
MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLGPGAERARMGS
RPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVTGVTASKRKFIDDRRDQPFDK
RLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVG
SVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWAN
EKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVR
IKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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