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Report for CCDS47371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47371.1 Public Homo sapiens 6 C6orf52 24 110 108 CCDS HistoryNCBI Gene:347744Re-query CCDS DB by CCDS ID:47371.1Re-query CCDS DB by GeneID:347744See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47371.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259983.8 ENSP00000259983.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259983.8Link to Ensembl Protein Viewer:ENSP00000259983.3Re-query CCDS DB by Nucleotide ID:ENST00000259983Re-query CCDS DB by Protein ID:ENSP00000259983
Original member Current member EBI ENST00000426700.6 ENSP00000410749.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426700.6Link to Ensembl Protein Viewer:ENSP00000410749.2Re-query CCDS DB by Nucleotide ID:ENST00000426700Re-query CCDS DB by Protein ID:ENSP00000410749
Original member Current member NCBI NM_001145020.3 NP_001138492.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145020.3Link to Protein Sequence:NP_001138492.1Re-query CCDS DB by Nucleotide ID:NM_001145020Re-query CCDS DB by Protein ID:NP_001138492Link to BLAST:NP_001138492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138492.1 152 Q5T4I8-1 152 100% 0 0

Chromosomal Locations for CCDS 47371.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 10671456 10671598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10683187 10683232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10686966 10687164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10687480 10687550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCCCAACCAGAGAGTTCTGCAGATTTTGGCATAGCTCAACAAAATAACTATTACTGCTACTGGCAAA
GTCTCCCCTCTGCTATTAGAGTGAAGCAGGAGTTCCAGCCCAGCCAGAGTTACCGCTATGGCAACTGGTA
TGCGCGACAGCACGGCTCTTACCTTCTTTCTGGCTACAGCTATGGCTGTGCAGTGGATGGAAATGGAAAG
GACTGTTTTTCTGCGCATGAGACCCCTGAACACACAGCTGGAACTCTGGTTATGCCTAAGGAAACCACAC
CTCTAGCTGAAAACCAAGATGAAGACCCACTAGAAGATCCACATCTTCATTTGAATATTGAGGAATCAAA
CCAAGAGTTTATGGTGAAAAGTGAAGAACTCTACGACTCCCTCATGAATTGCCACTGGCAGCCTCTGGAC
ACAGTTCACTCCGAAATCCCAGATGAGACCCCGAAGTGA

Translation (152 aa):
MAQPESSADFGIAQQNNYYCYWQSLPSAIRVKQEFQPSQSYRYGNWYARQHGSYLLSGYSYGCAVDGNGK
DCFSAHETPEHTAGTLVMPKETTPLAENQDEDPLEDPHLHLNIEESNQEFMVKSEELYDSLMNCHWQPLD
TVHSEIPDETPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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