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Report for CCDS47415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47415.1 Public Homo sapiens 6 SRPK1 24 110 108 CCDS HistoryNCBI Gene:6732Re-query CCDS DB by CCDS ID:47415.1Re-query CCDS DB by GeneID:6732See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373825.7 ENSP00000362931.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373825.7Link to Ensembl Protein Viewer:ENSP00000362931.2Re-query CCDS DB by Nucleotide ID:ENST00000373825Re-query CCDS DB by Protein ID:ENSP00000362931
Original member Current member NCBI NM_003137.5 NP_003128.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003137.5Link to Protein Sequence:NP_003128.3Re-query CCDS DB by Nucleotide ID:NM_003137Re-query CCDS DB by Protein ID:NP_003128Link to BLAST:NP_003128.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003128.3 655 Q96SB4-2 655 100% 0 0

Chromosomal Locations for CCDS 47415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35835304 35835488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35838337 35838429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35842535 35842604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35857261 35857368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35869010 35869110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35869482 35869901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35870281 35870494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35870934 35870959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35872563 35872728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35874233 35874339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35886724 35886811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35888024 35888111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35888815 35888923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35890895 35891013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35920468 35920528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35921044 35921056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGAGCGGAAAGTGCTTGCGCTCCAGGCCCGAAAGAAAAGGACCAAGGCCAAGAAGGACAAAGCCCAAA
GGAAATCTGAAACTCAGCACCGAGGCTCTGCTCCCCACTCTGAGAGTGATCTACCAGAGCAGGAAGAGGA
GATTCTGGGATCTGATGATGATGAGCAAGAAGATCCTAATGATTATTGTAAAGGAGGTTATCATCTTGTG
AAAATTGGAGATCTATTCAATGGGAGATACCATGTGATCCGAAAGTTAGGCTGGGGACACTTTTCAACAG
TATGGTTATCATGGGATATTCAGGGGAAGAAATTTGTGGCAATGAAAGTAGTTAAAAGTGCTGAACATTA
CACTGAAACAGCACTAGATGAAATCCGGTTGCTGAAGTCAGTTCGCAATTCAGACCCTAATGATCCAAAT
AGAGAAATGGTTGTTCAACTACTAGATGACTTTAAAATATCAGGAGTTAATGGAACACATATCTGCATGG
TATTTGAAGTTTTGGGGCATCATCTGCTCAAGTGGATCATCAAATCCAATTATCAGGGGCTTCCACTGCC
TTGTGTCAAAAAAATTATTCAGCAAGTGTTACAGGGTCTTGATTATTTACATACCAAGTGCCGTATCATC
CACACTGACATTAAACCAGAGAACATCTTATTGTCAGTGAATGAGCAGTACATTCGGAGGCTGGCTGCAG
AAGCAACAGAATGGCAGCGATCTGGAGCTCCTCCGCCTTCCGGATCTGCAGTCAGTACTGCTCCCCAGCC
TAAACCAGCTGACAAAATGTCAAAGAATAAGAAGAAGAAATTGAAGAAGAAGCAGAAGCGCCAGGCAGAA
TTACTAGAGAAGCGAATGCAGGAAATTGAGGAAATGGAGAAAGAGTCGGGCCCTGGGCAAAAAAGACCAA
ACAAGCAAGAAGAATCAGAGAGTCCTGTTGAAAGACCCTTGAAAGAGAACCCACCTAATAAAATGACCCA
AGAAAAACTTGAAGAGTCAAGTACCATTGGCCAGGATCAAACGCTTATGGAACGTGATACAGAGGGTGGT
GCAGCAGAAATTAATTGCAATGGAGTGATTGAAGTCATTAATTATACTCAGAACAGTAATAATGAAACAT
TGAGACATAAAGAGGATCTACATAATGCTAATGACTGTGATGTCCAAAATTTGAATCAGGAATCTAGTTT
CCTAAGCTCCCAAAATGGAGACAGCAGCACATCTCAAGAAACAGACTCTTGTACACCTATAACATCTGAG
GTGTCAGACACCATGGTGTGCCAGTCTTCCTCAACTGTAGGTCAGTCATTCAGTGAACAACACATTAGCC
AACTTCAAGAAAGCATTCGGGCAGAGATACCCTGTGAAGATGAACAAGAGCAAGAACATAACGGACCACT
GGACAACAAAGGAAAATCCACGGCTGGAAATTTTCTTGTTAATCCCCTTGAGCCAAAAAATGCAGAAAAG
CTCAAGGTGAAGATTGCTGACCTTGGAAATGCTTGTTGGGTGCACAAACATTTCACTGAAGATATTCAAA
CAAGGCAATATCGTTCCTTGGAAGTTCTAATCGGATCTGGCTATAATACCCCTGCTGACATTTGGAGCAC
GGCATGCATGGCCTTTGAACTGGCCACAGGTGACTATTTGTTTGAACCTCATTCAGGGGAAGAGTACACT
CGAGATGAAGATCACATTGCATTGATCATAGAACTTCTGGGGAAGGTGCCTCGCAAGCTCATTGTGGCAG
GAAAATATTCCAAGGAATTTTTCACCAAAAAAGGTGACCTGAAACATATCACGAAGCTGAAACCTTGGGG
CCTTTTTGAGGTTCTAGTGGAGAAGTATGAGTGGTCGCAGGAAGAGGCAGCTGGCTTCACAGATTTCTTA
CTGCCCATGTTGGAGCTGATCCCTGAGAAGAGAGCCACTGCCGCCGAGTGTCTCCGGCACCCTTGGCTTA
ACTCCTAA

Translation (655 aa):
MERKVLALQARKKRTKAKKDKAQRKSETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPNDYCKGGYHLV
KIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPN
REMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRII
HTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPQPKPADKMSKNKKKKLKKKQKRQAE
LLEKRMQEIEEMEKESGPGQKRPNKQEESESPVERPLKENPPNKMTQEKLEESSTIGQDQTLMERDTEGG
AAEINCNGVIEVINYTQNSNNETLRHKEDLHNANDCDVQNLNQESSFLSSQNGDSSTSQETDSCTPITSE
VSDTMVCQSSSTVGQSFSEQHISQLQESIRAEIPCEDEQEQEHNGPLDNKGKSTAGNFLVNPLEPKNAEK
LKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYT
RDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFL
LPMLELIPEKRATAAECLRHPWLNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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