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Report for CCDS47446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47446.1 Public Homo sapiens 6 EYS 24 110 108 CCDS HistoryNCBI Gene:346007Re-query CCDS DB by CCDS ID:47446.1Re-query CCDS DB by GeneID:346007See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393380.6 ENSP00000377042.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393380.6Link to Ensembl Protein Viewer:ENSP00000377042.2Re-query CCDS DB by Nucleotide ID:ENST00000393380Re-query CCDS DB by Protein ID:ENSP00000377042
Original member Current member NCBI NM_001142801.2 NP_001136273.1 Accepted alive Link to Nucleotide Sequence:NM_001142801.2Link to Protein Sequence:NP_001136273.1Re-query CCDS DB by Nucleotide ID:NM_001142801Re-query CCDS DB by Protein ID:NP_001136273Link to BLAST:NP_001136273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136273.1 619 Q5T1H1-4 619 100% 0 0

Chromosomal Locations for CCDS 47446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 65332324 65332417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65334980 65335146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65344038 65344177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65353458 65353617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65384386 65384500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65402478 65402605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65405174 65405367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65490594 65490707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65494663 65495410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGACTGACAAATCAATCGTCATTCTGAGCCTGATGGTTTTTCACAGCTCTTTCATAAATGGAAAAACAT
GTAGACGGCAATTGGTGGAAGAATGGCATCCACAACCCTCATCATATGTGGTAAATTGGACACTAACAGA
AAACATCTGCTTGGACTTCTACAGAGATTGCTGGTTTTTGGGTGTAAACACTAAAATAGATACTTCAGGC
AATCAAGCTGTTCCCCAGATTTGCCCTTTGCAAATTCAATTAGGAGATATCCTTGTAATTTCTTCTGAAC
CATCTCTTCAATTTCCAGAAATAAATTTGATGAATGTTTCTGAAACATCTTTCGTTGGCTGTGTGCAAAA
TACCACAACGGAAGATCAGTTACTTTTTGGCTGCAGACTAAAAGGAATGCACACTGTTAATTCTAAGTGG
CTGAGTGTTGGGACACATTATTTTATCACAGTTATGGCAAGTGGTCCATCACCTTGTCCACTGGGACTTC
GACTAAATGTGACAGTGAAACAGCAGTTCTGCCAGGAATCTCTGAGTTCAGAATTTTGCTCTGGTCATGG
TAAATGTCTTAGTGAAGCTTGGAGCAAGACATATAGCTGCCATTGCCAGCCTCCATTTTCTGGAAAATAC
TGCCAGGAACTTGATGCATGTTCTTTTAAACCATGTAAAAATAATGGCAGTTGCATTAATAAAAGAGAAA
ATTGGGATGAGCAAGCATATGAATGTGTCTGTCACCCACCATTTACAGGAAAGAATTGCTCAGAAATAAT
TGGCCAGTGTCAACCACATGTCTGTTTCCATGGAAACTGCAGCAATATTACTTCAAATAGTTTCATTTGT
GAATGTGATGAGCAATTTTCAGGTCCATTCTGTGAGGTGTCAGCAAAACCTTGTGTTTCTCTGCTTTTTT
GGAAAAGAGGAATTTGCCCAAATAGCAGTTCTGCTTATACTTATGAATGCCCAAAAGGATCTTCCAGCCA
AAATGGTGAAACTGATGTCAGTGAGTTTTCATTAGTACCATGTCAGAATGGTACTGACTGCATCAAAATA
TCAAATGATGTTATGTGCATCTGTTCACCAATATTTACAGATTTGCTTTGTAAGAGCATTCAAACATCAT
GTGAGTCATTTCCTTTGAGGAATAATGCTACATGTAAGAAATGTGAGAAAGATTATCCTTGCAGCTGTAT
ATCAGGATTTACTGAAAAAAACTGTGAGAAAGCAATTGACCACTGTAAACTGCTCAGCATCAACTGTCTG
AATGAAGAATGGTGTTTCAATATAATTGGAAGATTCAAATATGTATGCATTCCAGGGTGCACAAAAAATC
CATGTTGGTTTTTGAAGAATGTTTACCTAATTCATCAACACCTCTGCTACTGTGGAGTCACCTTCCATGG
TATTTGCCAAGATAAAGGTCCTGCTCAATTTGAATATGTGTGGCAATTGGGATTTGCAGGATCTGAAGGC
GAAAAGTGCCAAGGGGTTATTGATGCCTATTTCTTTCTGGCTGCAAACTGCACTGAAGATGCAACCTATG
TGAACGATCCTGAAGATAATAATTCTTCATGTTGGTTCCCACATGAAGGCACAAAAGAGATTTGTGCAAA
TGGATGCAGTTGTTTGAGTGAAGAAGACAGTCAGGAATATCGGTATCTATGTTTTCTCAGATGGGCTGGC
AACATGTATCTGGAAAATACAACTGATGATCAAGAAAATGAGTGTCAACATGAAGCTGTTTGTAAAGATG
AAATTAATAGACCCAGAAGAATCCTCAACACGGTGATACCACACCAAATTCAGCAACATATAGAAAGGTT
TATACAGCATGACCAGGTGGGATTTATCGTAAGAATATAA

Translation (619 aa):
MTDKSIVILSLMVFHSSFINGKTCRRQLVEEWHPQPSSYVVNWTLTENICLDFYRDCWFLGVNTKIDTSG
NQAVPQICPLQIQLGDILVISSEPSLQFPEINLMNVSETSFVGCVQNTTTEDQLLFGCRLKGMHTVNSKW
LSVGTHYFITVMASGPSPCPLGLRLNVTVKQQFCQESLSSEFCSGHGKCLSEAWSKTYSCHCQPPFSGKY
CQELDACSFKPCKNNGSCINKRENWDEQAYECVCHPPFTGKNCSEIIGQCQPHVCFHGNCSNITSNSFIC
ECDEQFSGPFCEVSAKPCVSLLFWKRGICPNSSSAYTYECPKGSSSQNGETDVSEFSLVPCQNGTDCIKI
SNDVMCICSPIFTDLLCKSIQTSCESFPLRNNATCKKCEKDYPCSCISGFTEKNCEKAIDHCKLLSINCL
NEEWCFNIIGRFKYVCIPGCTKNPCWFLKNVYLIHQHLCYCGVTFHGICQDKGPAQFEYVWQLGFAGSEG
EKCQGVIDAYFFLAANCTEDATYVNDPEDNNSSCWFPHEGTKEICANGCSCLSEEDSQEYRYLCFLRWAG
NMYLENTTDDQENECQHEAVCKDEINRPRRILNTVIPHQIQQHIERFIQHDQVGFIVRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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