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Report for CCDS47448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47448.1 Public Homo sapiens 6 FAM135A 24 110 108 CCDS HistoryNCBI Gene:57579Re-query CCDS DB by CCDS ID:47448.1Re-query CCDS DB by GeneID:57579See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361499.7 ENSP00000354913.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361499.7Link to Ensembl Protein Viewer:ENSP00000354913.3Re-query CCDS DB by Nucleotide ID:ENST00000361499Re-query CCDS DB by Protein ID:ENSP00000354913
Original member Current member NCBI NM_001105531.3 NP_001099001.1 Accepted alive Link to Nucleotide Sequence:NM_001105531.3Link to Protein Sequence:NP_001099001.1Re-query CCDS DB by Nucleotide ID:NM_001105531Re-query CCDS DB by Protein ID:NP_001099001Link to BLAST:NP_001099001.1
Original member Current member NCBI NM_001330997.3 NP_001317926.1 Accepted alive Link to Nucleotide Sequence:NM_001330997.3Link to Protein Sequence:NP_001317926.1Re-query CCDS DB by Nucleotide ID:NM_001330997Re-query CCDS DB by Protein ID:NP_001317926Link to BLAST:NP_001317926.1
Original member Current member NCBI NM_001331001.3 NP_001317930.1 Accepted alive Link to Nucleotide Sequence:NM_001331001.3Link to Protein Sequence:NP_001317930.1Re-query CCDS DB by Nucleotide ID:NM_001331001Re-query CCDS DB by Protein ID:NP_001317930Link to BLAST:NP_001317930.1
Original member Current member NCBI NM_001331002.3 NP_001317931.1 Accepted alive Link to Nucleotide Sequence:NM_001331002.3Link to Protein Sequence:NP_001317931.1Re-query CCDS DB by Nucleotide ID:NM_001331002Re-query CCDS DB by Protein ID:NP_001317931Link to BLAST:NP_001317931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099001.1 1319 Q9P2D6-2 1319 100% 0 0
NP_001317926.1 1319 Q9P2D6-2 1319 100% 0 0
NP_001317930.1 1319 Q9P2D6-2 1319 100% 0 0
NP_001317931.1 1319 Q9P2D6-2 1319 100% 0 0

Chromosomal Locations for CCDS 47448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70428343 70428419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70452492 70452571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70475410 70475549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70475663 70475733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70477159 70477332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70480901 70481027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70482001 70482154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70491034 70491083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70502636 70502791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70522513 70522586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70523967 70524121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70524931 70526698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70528292 70528452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70533160 70533251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70533757 70533854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70536260 70536411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70538291 70538401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70556750 70556863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70559716 70559921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3960 nt):
ATGACTGAAGTTCAAGCAATGGTAGAATTCTCTGTGGAGCTAAACAAGTTCTACAATGTGGATTTGTTTC
AGAGAGGTTTTTACCAGATTCGTGCTTCTATGAAAATTCCATCAAGAATTCCCCACAGAGTAGAAGCTAG
TTTGTTGCATGCAACAGGTATGACTTTAGCCTTTCCAGCCTCAGTTCATGATTCTCTAATTTGCAGTAAA
ACATTTCAAATTTTGTACAAAAATGAAGAGGTTGTTTTAAATGATGTTATGATCTTCAAAGTAAAAATGC
TATTGGATGAAAGAAAGATTGAAGAAACCCTTGAGGAAATGAATTTTCTATTATCCTTGGATCTACACTT
CACAGATGGAGATTATTCGGCAGATGATCTGAATGCCTTGCAACTAATAAGTAGCCGAACATTGAAGCTG
CACTTTAGCCCCCATAGAGGCCTTCATCATCATGTTAATGTTATGTTTGATTACTTCCACCTTTCTGTTG
TGTCTGTTACAGTTCATGCATCATTGGTTGCACTACACCAGCCACTAATAAGCTTTCCTCGCCCTGTGAA
GACAACTTGGTTAAATAGAAATGCACCAGCACAAAACAAAGATTCCGTGATTCCTACTCTTGAAAGTGTG
GTCTTTGGTATTAACTACACAAAACAGTTATCACCAGATGGTTGTAGCTTCATCATTGCAGACTCCTTCC
TACATCATGCGTATCGTTTTCATTATACACTTTGTGCCACTTTGCTGCTAGCCTTCAAGGGATTGCACAG
CTACTTCATTACAGTAACAGAAGAGATTCCTTCTTGTCAGAAACTAGAACTGGAGGAAATGGATGTAGAA
GCTCGACTTACTGAACTATGTGAAGAAGTTAAGAAAATAGAGAATCCTGATGAACTGGCAGAACTTATAA
ATATGAATCTTGCGCAACTTTGCTCACTTTTGATGGCTTTATGGGGACAGTTTCTGGAAGTTATAACGCT
ACACGAAGAACTAAGAATATTATTAGCACAAGAGCACCATACTTTGAGGGTACGCAGATTTTCTGAGGCA
TTCTTTTGTTTTGAGCATCCAAGAGAAGCTGCCATTGCATACCAGGAACTTCATGCTCAGAGTCATCTAC
AGATGTGCACCGCTATCAAAAATACTTCCTTCTGCAGTTCTCTTCCACCCTTACCTATTGAATGTAGTGA
ATTAGATGGAGATCTCAATTCATTACCTATAATCTTTGAAGATAGGTATTTAGATTCAGTTACTGAAGGT
AAACTTGATATCTCCCAGGACGATAGTGAAATTACACAAATGGAACACAATCTGGCATCCAGAAGGTCAT
CAGACGATTGCCATGATCATCAAACAACCCCATCTTTGGGAGTTAGAACAATTGAAATAAAGCCCAGTAA
TAAAGATCCTTTCAGTGGAGAGAATATAACTGTCAAACTAGGACCTTGGACAGAGCTTCGACAAGAGGAA
ATACTTGTGGATAATTTACTACCCAACTTTGAGTCCTTAGAATCTAATGGTAAATCTAAATCTATAGAAA
TAACATTTGAAAAGGAAGCTTTGCAAGAAGCAAAGTGTCTTTCTATTGGAGAATCATTAACTAAATTACG
AAGTAATCTACCTGCCCCTTCTACAAAAGAATATCATGTTGTAGTAAGTGGAGATACAATTAAGTTACCA
GATATTAGTGCCACATATGCCTCATCTAGATTTTCAGATTCAGGTGTTGAAAGTGAACCGAGTTCTTTTG
CGACACATCCAAACACTGATTTAGTCTTTGAAACTGTGCAAGGGCAAGGTCCTTGCAATAGTGAAAGATT
ATTTCCTCAGCTTTTGATGAAACCTGATTATAATGTAAAATTTTCATTAGGAAATCATTGTACTGAGAGT
ACAAGTGCTATAAGTGAAATACAGTCATCTTTGACATCCATAAACTCTCTACCCTCCGATGATGAACTGT
CACCTGATGAAAATTCTAAGAAATCTGTTGTACCTGAATGCCATCTAAATGATAGCAAAACTGTATTAAA
TCTAGGAACGACTGATTTGCCAAAATGTGATGATACTAAAAAGTCAAGTATCACTTTGCAACAGCAGAGT
GTTGTATTTTCAGGGAACTTGGACAATGAAACTGTAGCAATACATTCCTTAAATTCAAGCATTAAAGACC
CTTTACAATTTGTTTTTTCAGATGAAGAGACTTCCAGTGATGTGAAAAGTAGTTGCAGCTCCAAACCTAA
CTTGGATACTATGTGTAAAGGCTTCCAGAGTCCTGATAAATCTAATAACTCTACAGGGACAGCAATTACA
TTAAATTCAAAACTGATTTGTTTAGGCACTCCTTGTGTCATTTCAGGTTCCATTTCTAGTAATACAGATG
TTAGTGAAGATAGAACTATGAAAAAAAATAGTGATGTATTAAATCTCACACAGATGTATTCAGAAATCCC
TACAGTTGAAAGTGAAACTCATCTGGGTACAAGTGATCCTTTTTCAGCCAGTACTGATATAGTAAAGCAA
GGGCTTGTGGAAAATTATTTTGGTTCTCAAAGCAGTACGGATATTTCTGACACATGTGCTGTTAGCTACA
GCAATGCACTTAGCCCTCAGAAGGAAACTTCTGAAAAAGAAATTAGTAATCTTCAGCAGGAACAGGATAA
AGAGGATGAGGAGGAAGAGCAGGATCAACAAATGGTTCAAAATGGGTACTATGAAGAAACAGATTATTCA
GCTTTGGATGGAACAATAAATGCTCACTATACAAGCAGAGATGAACTAATGGAAGAAAGACTTACAAAAT
CTGAAAAAATAAACAGTGACTATCTGAGAGATGGTATAAACATGCCTACTGTCTGTACTTCTGGTTGTTT
GTCCTTCCCGTCTGCACCACGAGAGTCTCCTTGTAATGTTAAATATTCTTCCAAAAGTAAATTTGATGCC
ATTACAAAGCAGCCAAGCAGTACTTCTTACAACTTCACTTCTTCGATTTCCTGGTATGAAAGTTCACCAA
AACCTCAAATACAAGCCTTCCTTCAGGCAAAAGAAGAACTGAAGCTACTAAAACTTCCTGGGTTCATGTA
CAGTGAAGTTCCTCTGCTGGCATCCTCAGTACCTTATTTTAGTGTAGAAGAAGAGGATGGTTCTGAAGAT
GGAGTACATCTGATTGTCTGTGTGCACGGTTTAGATGGAAACAGTGCAGATCTCCGATTAGTAAAAACTT
ACATTGAACTTGGATTGCCTGGGGGAAGAATTGATTTTCTTATGTCTGAGAGAAATCAGAATGATACTTT
TGCTGATTTTGATAGCATGACTGATCGTCTTTTGGATGAGATAATACAGTATATTCAGATATATAGTCTA
ACAGTCTCAAAAATAAGCTTTATTGGACATTCGTTGGGCAATTTAATAATTCGTTCAGTGCTTACAAGGC
CAAGGTTTAAATATTACCTCAACAAACTTCATACCTTTCTGTCTCTTTCTGGACCTCACCTTGGTACACT
CTACAACAGCAGTGCTCTTGTTAATACAGGTCTCTGGTTTATGCAGAAATGGAAAAAATCAGGTTCGCTT
TTGCAGCTGACATGTCGAGATCACTCAGACCCTCGCCAAACTTTTTTATATAAGCTTAGTAACAAAGCAG
GGCTTCATTATTTCAAAAATGTTGTGCTAGTGGGATCCCTACAGGATCGCTATGTTCCTTATCACTCTGC
CCGCATTGAAATGTGTAAAACAGCTTTAAAGGACAAACAGTCAGGACAGATCTATTCAGAAATGATCCAC
AACTTGCTTCGACCCGTTCTGCAAAGCAAGGACTGTAATTTGGTTCGCTATAATGTCATCAATGCATTGC
CCAATACAGCTGATTCACTCATTGGGAGAGCTGCACATATAGCTGTTCTTGATTCGGAAATATTTTTAGA
GAAATTCTTTCTGGTTGCTGCCCTCAAATATTTCCAATAG

Translation (1319 aa):
MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLLHATGMTLAFPASVHDSLICSK
TFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTDGDYSADDLNALQLISSRTLKL
HFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESV
VFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVE
ARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEA
FFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEG
KLDISQDDSEITQMEHNLASRRSSDDCHDHQTTPSLGVRTIEIKPSNKDPFSGENITVKLGPWTELRQEE
ILVDNLLPNFESLESNGKSKSIEITFEKEALQEAKCLSIGESLTKLRSNLPAPSTKEYHVVVSGDTIKLP
DISATYASSRFSDSGVESEPSSFATHPNTDLVFETVQGQGPCNSERLFPQLLMKPDYNVKFSLGNHCTES
TSAISEIQSSLTSINSLPSDDELSPDENSKKSVVPECHLNDSKTVLNLGTTDLPKCDDTKKSSITLQQQS
VVFSGNLDNETVAIHSLNSSIKDPLQFVFSDEETSSDVKSSCSSKPNLDTMCKGFQSPDKSNNSTGTAIT
LNSKLICLGTPCVISGSISSNTDVSEDRTMKKNSDVLNLTQMYSEIPTVESETHLGTSDPFSASTDIVKQ
GLVENYFGSQSSTDISDTCAVSYSNALSPQKETSEKEISNLQQEQDKEDEEEEQDQQMVQNGYYEETDYS
ALDGTINAHYTSRDELMEERLTKSEKINSDYLRDGINMPTVCTSGCLSFPSAPRESPCNVKYSSKSKFDA
ITKQPSSTSYNFTSSISWYESSPKPQIQAFLQAKEELKLLKLPGFMYSEVPLLASSVPYFSVEEEDGSED
GVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSL
TVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSL
LQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIH
NLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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