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Report for CCDS47453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47453.1 Public Homo sapiens 6 TMEM30A 24 110 108 CCDS HistoryNCBI Gene:55754Re-query CCDS DB by CCDS ID:47453.1Re-query CCDS DB by GeneID:55754See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475111.6 ENSP00000431007.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475111.6Link to Ensembl Protein Viewer:ENSP00000431007.1Re-query CCDS DB by Nucleotide ID:ENST00000475111Re-query CCDS DB by Protein ID:ENSP00000431007
Original member Current member NCBI NM_001143958.2 NP_001137430.1 Accepted alive Link to Nucleotide Sequence:NM_001143958.2Link to Protein Sequence:NP_001137430.1Re-query CCDS DB by Nucleotide ID:NM_001143958Re-query CCDS DB by Protein ID:NP_001137430Link to BLAST:NP_001137430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137430.1 325 Q9NV96-2 325 100% 0 0

Chromosomal Locations for CCDS 47453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 75256102 75256295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75258780 75258986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75259347 75259490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75260824 75260911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75265231 75265338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75284402 75284638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGATGAACTATAACGCGAAGGATGAAGTGGACGGTGGGCCCCCGTGTGCTCCGGGGGGCACCGCGA
AGACTCGGAGACCGGATAACACGGCCTTCAAACAGCAACGGCTGCCAGCTTGGCAGCCCATCCTTACGGC
TGGCACGGTGCTACCTATTTTCTTCATCATCGGTCTCATCTTCATTCCCATCGGCATTGGCATTTTTGTC
ACCTCCAACAACATCCGCGAGATCGAGGGCAACGTGTTTATGTATTATGGACTGTCTAATTTCTATCAAA
ACCATCGTCGTTACGTGAAATCTCGAGATGATAGTCAACTAAATGGAGATTCTAGTGCTTTGCTTAATCC
CAGTAAGGAATGTGAACCTTATCGAAGAAATGAAGACAAACCAATTGCTCCTTGTGGAGCTATTGCCAAC
AGCATGTTTAATGATACATTAGAATTGTTTCTCATTGGCAATGATTCTTATCCTATACCTATCGCTTTGA
AAAAGAAAGGTATTGCTTGGTGGACAGATAAAAATGTGAAATTCAGAAATCCCCCTGGAGGAGACAACCT
GGAAGAACGATTTAAAGGTACAACAAAGCCTGTGAACTGGCTTAAACCAGTTTACATGCTGGATTCTGAC
CCAGATAATAATGGATTCATAAATGAGGATTTTATTGTTTGGATGCGTACTGCAGCATTACCTACTTTTC
GCAAGTTGTATCGTCTTATAGAAAGGAAAAGTGATTTACATCCAACATTACCAGCTGGCCGATACTCTTT
GAATGTCACATACAATTACCCTGTACATTATTTTGATGGACGAAAACGGATGATCTTGAGCACTATTTCA
TGGATGGGAGGAAAAAATCCATTTTTGGGGATTGCTTACATCGCTGTTGGATCCATCTCCTTCCTTCTGG
GAGTTGTACTGCTAGTAATTAATCATAAATATAGAAACAGTAGTAATACAGCTGACATTACCATTTAA

Translation (325 aa):
MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFV
TSNNIREIEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIAN
SMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPVYMLDSD
PDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTIS
WMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADITI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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