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Report for CCDS47495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47495.1 Public Homo sapiens 6 ZC2HC1B 24 110 108 CCDS HistoryNCBI Gene:153918Re-query CCDS DB by CCDS ID:47495.1Re-query CCDS DB by GeneID:153918See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237275.9 ENSP00000237275.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237275.9Link to Ensembl Protein Viewer:ENSP00000237275.6Re-query CCDS DB by Nucleotide ID:ENST00000237275Re-query CCDS DB by Protein ID:ENSP00000237275
Original member Current member NCBI NM_001013623.3 NP_001013645.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013623.3Link to Protein Sequence:NP_001013645.1Re-query CCDS DB by Nucleotide ID:NM_001013623Re-query CCDS DB by Protein ID:NP_001013645Link to BLAST:NP_001013645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013645.1 222 Q5TFG8 222 100% 0 0

Chromosomal Locations for CCDS 47495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143864540 143864567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143884304 143884365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143886032 143886151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143886683 143886821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143898552 143898691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143903044 143903152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143937649 143937719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGCTGGGGCAGAACCATTTTTGGCAGATGGCAATCAGGAATTGTTTCCCTGTGAAGTCTGTGGAAGAC
GTTTTGCAGCAGATGTTCTGGAAAGGCATGGACCAATATGTAAGAAACTCTTCAACAGAAAGCGTAAACC
TTTCAGTTCTTTGAAGCAAAGATTACAGGGCACTGACATTCCTACTGTGAAGAAGACTCCACAATCCAAG
TCTCCACCTGTGAGGAAGTCTAACTGGAGACAACAACATGAAGACTTTATTAATGCAATCCGATCAGCAA
AGCAGTGTATGCTAGCCATTAAAGAAGGCCGACCCCTCCCACCTCCACCCCCTCCATCCTTGAACCCAGA
TTATATTCAACGTCCATATTGTATGAGAAGGTTTAATGAAAGCGCAGCTGAGCGACATACTAATTTCTGC
AAGGATCAGTCTTCTCGCCGAGTCTTTAATCCAGCTCAGACAGCAGCCAAATTGGCATCCAGAGCTCAGG
GTAGGGCTCAGATGGGTCCAAAAAAAGAACCAACTGTTACCAGTGCTGTGGGAGCTTTGCTGCAGAACAG
GGTCCTGGTGGCCACGAATGAAGTCCCAACCAAGTCAGGATTAGCTATGGACCCTGCTTCTGGAGCAAAA
CTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAA

Translation (222 aa):
MAGAEPFLADGNQELFPCEVCGRRFAADVLERHGPICKKLFNRKRKPFSSLKQRLQGTDIPTVKKTPQSK
SPPVRKSNWRQQHEDFINAIRSAKQCMLAIKEGRPLPPPPPPSLNPDYIQRPYCMRRFNESAAERHTNFC
KDQSSRRVFNPAQTAAKLASRAQGRAQMGPKKEPTVTSAVGALLQNRVLVATNEVPTKSGLAMDPASGAK
LRQGFSKSSKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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