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Report for CCDS47509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47509.1 Public Homo sapiens 6 IPCEF1 24 110 108 CCDS HistoryNCBI Gene:26034Re-query CCDS DB by CCDS ID:47509.1Re-query CCDS DB by GeneID:26034See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47509.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367220.9 ENSP00000356189.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367220.9Link to Ensembl Protein Viewer:ENSP00000356189.4Re-query CCDS DB by Nucleotide ID:ENST00000367220Re-query CCDS DB by Protein ID:ENSP00000356189
Original member Current member EBI ENST00000422970.6 ENSP00000394751.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422970.6Link to Ensembl Protein Viewer:ENSP00000394751.2Re-query CCDS DB by Nucleotide ID:ENST00000422970Re-query CCDS DB by Protein ID:ENSP00000394751
Original member Current member NCBI NM_001130699.2 NP_001124171.1 Accepted alive Link to Nucleotide Sequence:NM_001130699.2Link to Protein Sequence:NP_001124171.1Re-query CCDS DB by Nucleotide ID:NM_001130699Re-query CCDS DB by Protein ID:NP_001124171Link to BLAST:NP_001124171.1
Original member Current member NCBI NM_001130700.2 NP_001124172.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130700.2Link to Protein Sequence:NP_001124172.1Re-query CCDS DB by Nucleotide ID:NM_001130700Re-query CCDS DB by Protein ID:NP_001124172Link to BLAST:NP_001124172.1
Original member Current member NCBI NM_001394799.1 NP_001381728.1 Accepted alive Link to Nucleotide Sequence:NM_001394799.1Link to Protein Sequence:NP_001381728.1Re-query CCDS DB by Nucleotide ID:NM_001394799Re-query CCDS DB by Protein ID:NP_001381728Link to BLAST:NP_001381728.1
Original member Current member NCBI NM_001394800.1 NP_001381729.1 Accepted alive Link to Nucleotide Sequence:NM_001394800.1Link to Protein Sequence:NP_001381729.1Re-query CCDS DB by Nucleotide ID:NM_001394800Re-query CCDS DB by Protein ID:NP_001381729Link to BLAST:NP_001381729.1
Original member Current member NCBI NM_001394801.1 NP_001381730.1 Accepted alive Link to Nucleotide Sequence:NM_001394801.1Link to Protein Sequence:NP_001381730.1Re-query CCDS DB by Nucleotide ID:NM_001394801Re-query CCDS DB by Protein ID:NP_001381730Link to BLAST:NP_001381730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124171.1 438 Q8WWN9-2 438 100% 0 0
NP_001124172.1 438 Q8WWN9-2 438 100% 0 0
NP_001381728.1 438 Q8WWN9-2 438 100% 0 0
NP_001381729.1 438 Q8WWN9-2 438 100% 0 0
NP_001381730.1 438 Q8WWN9-2 438 100% 0 0

Chromosomal Locations for CCDS 47509.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 154159828 154160040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154167920 154168113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154199668 154200040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154212770 154212855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154214218 154214276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154221257 154221328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154223170 154223243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154246591 154246760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154247449 154247488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154265912 154265947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGACATCATACATGGCTATTGATGGCAGTGCTCTTCAGGTTCCCTTGCGTCAGAAGCCCAGGAGGAAAA
CTCAAGGTTTTCTCACGATGAGTCGGAGGAGGATATCGTGTAAAGATCTGGGCCATGCTGACTGCCAAGG
GTGGCTGTATAAGAAAAAGGAAAAGGGAAGTTTCCTAAGCAACAAATGGAAAAAGTTCTGGGTGATACTG
AAGGGGTCGTCACTGTACTGGTATAGCAATCAAATGGCAGAGAAAGCTGATGGATTTGTCAACCTGCCTG
ATTTCACTGTGGAAAGAGCATCTGAATGCAAGAAAAAGCATGCTTTTAAGATCAGCCATCCACAGATCAA
GACCTTTTATTTTGCAGCTGAGAATGTGCAGGAAATGAACGTGTGGTTAAATAAACTTGGATCGGCTGTA
ATCCATCAGGAATCCACTACAAAGGATGAAGAATGTTACAGTGAAAGTGAACAGGAAGATCCAGAAATAG
CTGCGGAGACACCACCCCCTCCTCACGCTTCCCAGACTCAGTCTTTGACTGCACAGCAGGCATCTTCATC
CTCACCCAGCCTGAGTGGAACGTCGTATTCTTTCTCTTCCCTGGAAAATACAGTGAAGACACCCAGCAGT
TTTCCTTCCTCCTTATCTAAAGAGAGACAATCCTTGCCTGACACAGTTAACAGTTTGTCTGCTGCTGAAG
ATGAGGGACAACCAATAACGTTTGCTGTGCAAGTTCATTCACCTGTACCCTCAGAGGCAGGCATCCACAA
GGCCCTGGAAAACAGTTTTGTCACATCAGAAAGTGGATTTTTGAACTCTTTATCTAGTGATGATACTTCT
TCATTGAGTAGCAATCATGACCATCTTACTGTCCCAGATAAGCCTGCTGGATCAAAGATCATGGACAAAG
AAGAGACAAAAGTGTCTGAAGATGATGAAATGGAGAAGCTGTACAAATCATTAGAGCAAGCTAGTCTATC
TCCTCTTGGGGACCGACGACCTTCGACTAAAAAGGAGTTGAGAAAATCCTTTGTTAAGCGGTGTAAAAAT
CCATCTATAAACGAGAAACTCCACAAAATCCGAACATTGAATAGCACATTAAAGTGTAAAGAACATGATC
TGGCCATGATTAACCAGTTGCTGGATGACCCGAAGCTGACAGCCAGGAAATACAGAGAGTGGAAAGTCAT
GAACACCCTGCTGATCCAGGACATCTATCAGCAGCAGCGGGCTTCGCCTGCCCCTGATGACACTGATGAC
ACCCCCCAGGAACTCAAGAAATCACCTTCTTCTCCCTCTGTTGAAAATTCCATTTGA

Translation (438 aa):
MTSYMAIDGSALQVPLRQKPRRKTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVIL
KGSSLYWYSNQMAEKADGFVNLPDFTVERASECKKKHAFKISHPQIKTFYFAAENVQEMNVWLNKLGSAV
IHQESTTKDEECYSESEQEDPEIAAETPPPPHASQTQSLTAQQASSSSPSLSGTSYSFSSLENTVKTPSS
FPSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVHSPVPSEAGIHKALENSFVTSESGFLNSLSSDDTS
SLSSNHDHLTVPDKPAGSKIMDKEETKVSEDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCKN
PSINEKLHKIRTLNSTLKCKEHDLAMINQLLDDPKLTARKYREWKVMNTLLIQDIYQQQRASPAPDDTDD
TPQELKKSPSSPSVENSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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