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Report for CCDS47558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47558.1 Public Homo sapiens 7 CDCA7L 24 110 108 CCDS HistoryNCBI Gene:55536Re-query CCDS DB by CCDS ID:47558.1Re-query CCDS DB by GeneID:55536See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373934.4 ENSP00000363045.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373934.4Link to Ensembl Protein Viewer:ENSP00000363045.4Re-query CCDS DB by Nucleotide ID:ENST00000373934Re-query CCDS DB by Protein ID:ENSP00000363045
Original member Current member NCBI NM_001127371.3 NP_001120843.1 Accepted alive Link to Nucleotide Sequence:NM_001127371.3Link to Protein Sequence:NP_001120843.1Re-query CCDS DB by Nucleotide ID:NM_001127371Re-query CCDS DB by Protein ID:NP_001120843Link to BLAST:NP_001120843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120843.1 408 Q96GN5-5 408 100% 0 0

Chromosomal Locations for CCDS 47558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 21902322 21902352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21902978 21903114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21904110 21904259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21905506 21905631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21906289 21906456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21906568 21906639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21908130 21908507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21916754 21916894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 21945781 21945804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGGAGTTGGCGACTCGCTACCAGATCCCTAAAGAAGTGGCTGACATCTTTAACGCCCCCAGTGATGATG
AAGAGTTTGTTGGCTTCCGAGATGATGTTCCCATGGAAACCCTCTCGTCAGAGGAGAGCTGCGATAGTTT
TGACTCACTAGAGTCAGGGAAACAGGTCGTGGAGTCAGATTTGAGTGATGATGGCAAAGCATCTTTGGTG
AGCGAGGAAGAGGAAGATGAAGAAGAAGATAAGGCTACCCCTAGAAGAAGCAGGTCTAGAAGAAGTAGTA
TTGGTCTTCGAGTAGCCTTTCAGTTCCCCACCAAGAAGCTGGCCAACAAACCAGATAAAAACAGTTCTTC
CGAGCAGTTGTTTTCTAGCGCACGCTTACAGAATGAGAAAAAAACAATTCTTGAAAGAAAGAAAGACTGT
AGACAGGTGATACAAAGGGAAGATTCTACCTCTGAGTCTGAGGATGACTCTCGGGATGAGAGCCAGGAGA
GTTCAGATGCTTTGCTGAAAAGGACCATGAACATCAAGGAGAACAAAGCCATGCTTGCCCAGTTATTGGC
GGAATTGAACTCGATGCCAGATTTCTTCCCAGTACGAACCCCAACCTCAGCTTCTAGGAAGAAGACAGTG
AGGCGGGCCTTCTCGGAGGGACAGATCACGCGGCGTATGAACCCAACCCGGAGTGCGCGGCCTCCTGAGA
AGTTTGCTCTAGAGAACTTCACTGTCTCAGCCGCTAAATTTGCGGAAGAGTTTTACAGCTTCCGAAGAAG
GAAGACAATTGGGGGGAAATGCCGGGAGTACAGACGACGTCACCGTATATCTTCTTTTCGGCCAGTGGAG
GATATCACCGAAGAGGACTTAGAAAATGTTGCCATAACTGTTCGAGATAAAATCTATGATAAAGTTCTGG
GTAACACGTGCCATCAGTGTCGACAAAAGACCATCGACACCAAGACAGTGTGTCGGAACCAGGGTTGCTG
TGGTGTGCGAGGACAGTTCTGTGGACCATGCCTGCGGAACCGCTATGGGGAGGATGTCAGATCGGCATTG
CTGGACCCGGATTGGGTGTGTCCCCCCTGTCGTGGGATCTGCAATTGCAGCTACTGTCGGAAGCGTGACG
GCCGCTGTGCCACAGGAATCCTCATTCATCTGGCCAAGTTTTATGGTTATGACAATGTTAAGGAATATCT
GGAGAGCTTACAAAAGGAGCTGGTAGAAGACAATTAA

Translation (408 aa):
MELATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQVVESDLSDDGKASLV
SEEEEDEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILERKKDC
RQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPTSASRKKTV
RRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSFRRRKTIGGKCREYRRRHRISSFRPVE
DITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSAL
LDPDWVCPPCRGICNCSYCRKRDGRCATGILIHLAKFYGYDNVKEYLESLQKELVEDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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