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Report for CCDS47623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47623.1 Public Homo sapiens 7 PHTF2 24 110 108 CCDS HistoryNCBI Gene:57157Re-query CCDS DB by CCDS ID:47623.1Re-query CCDS DB by GeneID:57157See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000450574.5 ENSP00000387355.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450574.5Link to Ensembl Protein Viewer:ENSP00000387355.1Re-query CCDS DB by Nucleotide ID:ENST00000450574Re-query CCDS DB by Protein ID:ENSP00000387355
Original member Current member NCBI NM_001127359.2 NP_001120831.1 Accepted alive Link to Nucleotide Sequence:NM_001127359.2Link to Protein Sequence:NP_001120831.1Re-query CCDS DB by Nucleotide ID:NM_001127359Re-query CCDS DB by Protein ID:NP_001120831Link to BLAST:NP_001120831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120831.1 356 Q8N3S3-5 356 100% 0 0

Chromosomal Locations for CCDS 47623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 77840256 77840300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77893608 77893664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77893982 77893993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77900711 77900780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77901762 77901920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77908793 77908958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77910245 77910409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77920279 77920465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77922623 77922832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAGATTGGAGCATATGATCAACAAATAT
GGGAAAAATCTGTTGAACAGAGAGAAATCAAGTTTATTAAACTGGGGCTAAGGAATAAACCAAAGAAAAC
AGCACATGTGAAACCAGACCTCATAGATGTTGATCTTGTAAGAGGGTCTGCATTTGCAAAGGCAAAGCCT
GAAAGTCCTTGGACTTCTCTGACCAGAAAGGGAATTGTTCGAGTTGTATTTTTCCCCTTTTTCTTCCGGT
GGTGGTTACAAGTAACATCAAAGGTCATCTTTTTCTGGCTTCTTGTCCTTTATCTTCTTCAAGTTGCTGC
AATAGTATTATTCTGCTCCACTTCTAGCCCACACAGCATACCTCTGACAGAGGTGATTGGGCCGATATGG
CTGATGCTGCTCCTGGGAACTGTGCATTGCCAGATTGTTTCCACAAGAACACCCAAACCTCCTCTAAGTA
CAGGGGGTAAAAGAAGAAGGAAATTAAGAAAAGCAGCCCATTTGGAAGTACATAGGGAAGGAGATGGTTC
TAGTACCACAGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAAGCACCTCTCACAGCGTTGGC
ACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCTTTTTATCAGGATCAAAGAAAGCAAAGAATTCAATTG
ATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGACTGTTAAAAGCGGTGAAGA
TGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCTGGAACACAGGAACA
CTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTCTCCAGTGAGG
AAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGAAGGTGTTCTTCGGAATAG
AAAGTCACACCATTATAAGAAACATTACCCTAATGAGGTATATACTTTGTCCTTAAGTGTATACATACGT
ATCTATTTTATATGTTACTAA

Translation (356 aa):
MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKP
ESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSTSSPHSIPLTEVIGPIW
LMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQNHGTSTSHSVG
TVFRDLWHAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGIQNHEPQCETIRPEETAWNTGT
LRNGPSKDTQRTITNVSDEVSSEEGPETGYSLRRHVDRTSEGVLRNRKSHHYKKHYPNEVYTLSLSVYIR
IYFICY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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