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Report for CCDS4764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4764.1 Public Homo sapiens 6 HLA-DPA1 24 110 108 CCDS HistoryNCBI Gene:3113Re-query CCDS DB by CCDS ID:4764.1Re-query CCDS DB by GeneID:3113See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4764.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419277.5 ENSP00000393566.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419277.5Link to Ensembl Protein Viewer:ENSP00000393566.1Re-query CCDS DB by Nucleotide ID:ENST00000419277Re-query CCDS DB by Protein ID:ENSP00000393566
Original member Current member EBI ENST00000692443.1 ENSP00000509163.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692443.1Link to Ensembl Protein Viewer:ENSP00000509163.1Re-query CCDS DB by Nucleotide ID:ENST00000692443Re-query CCDS DB by Protein ID:ENSP00000509163
Original member Current member NCBI NM_001242524.2 NP_001229453.1 Accepted alive Link to Nucleotide Sequence:NM_001242524.2Link to Protein Sequence:NP_001229453.1Re-query CCDS DB by Nucleotide ID:NM_001242524Re-query CCDS DB by Protein ID:NP_001229453Link to BLAST:NP_001229453.1
Original member Current member NCBI NM_001242525.2 NP_001229454.1 Accepted alive Link to Nucleotide Sequence:NM_001242525.2Link to Protein Sequence:NP_001229454.1Re-query CCDS DB by Nucleotide ID:NM_001242525Re-query CCDS DB by Protein ID:NP_001229454Link to BLAST:NP_001229454.1
Current member NCBI NM_001405020.1 NP_001391949.1 Accepted alive Link to Nucleotide Sequence:NM_001405020.1Link to Protein Sequence:NP_001391949.1Re-query CCDS DB by Nucleotide ID:NM_001405020Re-query CCDS DB by Protein ID:NP_001391949Link to BLAST:NP_001391949.1
Original member NCBI NM_033554.3 NP_291032.2 Updated not alive Link to Nucleotide Sequence:NM_033554.3Link to Protein Sequence:NP_291032.2Re-query CCDS DB by Nucleotide ID:NM_033554Re-query CCDS DB by Protein ID:NP_291032
Current member NCBI NM_033554.4 NP_291032.2 Accepted alive Link to Nucleotide Sequence:NM_033554.4Link to Protein Sequence:NP_291032.2Re-query CCDS DB by Nucleotide ID:NM_033554Re-query CCDS DB by Protein ID:NP_291032Link to BLAST:NP_291032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229453.1 260 P20036 260 100% 0 0
NP_001229454.1 260 P20036 260 100% 0 0
NP_001391949.1 260 P20036 260 100% 0 0
NP_291032.2 260 P20036 260 100% 0 0

Chromosomal Locations for CCDS 4764.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33068650 33068804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33069019 33069300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33069641 33069886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33073471 33073570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGCGCCCTGAAGACAGAATGTTCCATATCAGAGCTGTGATCTTGAGAGCCCTCTCCTTGGCTTTCCTGC
TGAGTCTCCGAGGAGCTGGGGCCATCAAGGCGGACCATGTGTCAACTTATGCCGCGTTTGTACAGACGCA
TAGACCAACAGGGGAGTTTATGTTTGAATTTGATGAAGATGAGATGTTCTATGTGGATCTGGACAAGAAG
GAGACCGTCTGGCATCTGGAGGAGTTTGGCCAAGCCTTTTCCTTTGAGGCTCAGGGCGGGCTGGCTAACA
TTGCTATATTGAACAACAACTTGAATACCTTGATCCAGCGTTCCAACCACACTCAGGCCACCAACGATCC
CCCTGAGGTGACCGTGTTTCCCAAGGAGCCTGTGGAGCTGGGCCAGCCCAACACCCTCATCTGCCACATT
GACAAGTTCTTCCCACCAGTGCTCAACGTCACGTGGCTGTGCAACGGGGAGCTGGTCACTGAGGGTGTCG
CTGAGAGCCTCTTCCTGCCCAGAACAGATTACAGCTTCCACAAGTTCCATTACCTGACCTTTGTGCCCTC
AGCAGAGGACTTCTATGACTGCAGGGTGGAGCACTGGGGCTTGGACCAGCCGCTCCTCAAGCACTGGGAG
GCCCAAGAGCCAATCCAGATGCCTGAGACAACGGAGACTGTGCTCTGTGCCCTGGGCCTGGTGCTGGGCC
TAGTCGGCATCATCGTGGGCACCGTCCTCATCATAAAGTCTCTGCGTTCTGGCCATGACCCCCGGGCCCA
GGGGACCCTGTGA

Translation (260 aa):
MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFYVDLDKK
ETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHI
DKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWE
AQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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