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Report for CCDS47673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47673.1 Public Homo sapiens 7 POLR2J3 24 110 108 CCDS HistoryNCBI Gene:548644Re-query CCDS DB by CCDS ID:47673.1Re-query CCDS DB by GeneID:548644See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379340.9 ENSP00000368645.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379340.9Link to Ensembl Protein Viewer:ENSP00000368645.5Re-query CCDS DB by Nucleotide ID:ENST00000379340Re-query CCDS DB by Protein ID:ENSP00000368645
Original member Current member EBI ENST00000508848.5 ENSP00000425877.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508848.5Link to Ensembl Protein Viewer:ENSP00000425877.1Re-query CCDS DB by Nucleotide ID:ENST00000508848Re-query CCDS DB by Protein ID:ENSP00000425877
Original member Current member EBI ENST00000608621.5 ENSP00000477228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000608621.5Link to Ensembl Protein Viewer:ENSP00000477228.1Re-query CCDS DB by Nucleotide ID:ENST00000608621Re-query CCDS DB by Protein ID:ENSP00000477228
Original member Current member EBI ENST00000621093.5 ENSP00000483328.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621093.5Link to Ensembl Protein Viewer:ENSP00000483328.1Re-query CCDS DB by Nucleotide ID:ENST00000621093Re-query CCDS DB by Protein ID:ENSP00000483328
Original member Current member NCBI NM_001097615.3 NP_001091084.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001097615.3Link to Protein Sequence:NP_001091084.2Re-query CCDS DB by Nucleotide ID:NM_001097615Re-query CCDS DB by Protein ID:NP_001091084Link to BLAST:NP_001091084.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091084.2 115 Q9H1A7 115 100% 0 0

Chromosomal Locations for CCDS 47673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102567051 102567083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102568010 102568184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102569835 102569924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102572472 102572521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGATCACCATTAACAAGGACA
CCAAGGTACCCAATGCCTGTTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC
ACAACTCCTAAAAGACCCGCAAGTGCTATTTGCTGGCTACAAAGTCCCCCACCCCTTGGAGCACAAGATC
ATCATCCGAGTGCAGACCACGCCGGACTACAGCCCCCAGGAAGCCTTTACCAACGCCATCACCGACCTCA
TCAGTGAGCTGTCCCTGCTGGAGGAGCGCTTCCGGACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGA

Translation (115 aa):
MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKI
IIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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