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Report for CCDS47675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47675.1 Public Homo sapiens 7 UPK3BL1 24 110 108 CCDS HistoryNCBI Gene:100134938Re-query CCDS DB by CCDS ID:47675.1Re-query CCDS DB by GeneID:100134938See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340457.8 ENSP00000342938.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340457.8Link to Ensembl Protein Viewer:ENSP00000342938.8Re-query CCDS DB by Nucleotide ID:ENST00000340457Re-query CCDS DB by Protein ID:ENSP00000342938
Original member Current member NCBI NM_001114403.3 NP_001107875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114403.3Link to Protein Sequence:NP_001107875.1Re-query CCDS DB by Nucleotide ID:NM_001114403Re-query CCDS DB by Protein ID:NP_001107875Link to BLAST:NP_001107875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107875.1 263 B0FP48 263 100% 0 0

Chromosomal Locations for CCDS 47675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102637525 102637633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102638714 102638834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102639123 102639199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102640204 102640414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102640612 102640773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102642630 102642741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGACAACAGCTGGAGGCTTGGCCCGGCCATAGGGCTCTCTGCGGGACAGTCCCAGCTGCTAGTGTCGC
TGTTGCTGCTACTGACCCGTGTCCAGCCTGGGACAGACGTGGCTGCCCCAGAGCACATCAGCTATGTGCC
CCAGCTCTCAAACGACACCTTGGCGGGGAGGCTCACCCTGTCCACCTTCACGCTGGAGCAGCCTCTAGGC
CAGTTCAGCAGCCACAACATCTCTGACTTGGATACCATCTGGCTGGTGGTGGCCCTCAGCAACGCCACCC
AGAGCTTCACGGCCCCACGGACAAACCAGGACATCCCTGCTCCTGCCAACTTCTCCCAGAGGGGCTACTA
TCTCACACTGAGGGCCAACCGGGTGCTGTACCAGACCAGAGGCCAGCTCCATGTCCTCCGCGTCGGCAAT
GATACCCACTGCCAACCAACAAAAATTGGCTGCAACCATCCCCTACCAGGACCCGGCCCCTACAGGGTGA
AGTTCCTGGTGATGAATGACGAAGGACCCGTGGCTGAAACCAAGTGGTCCAGCGACACTCGCCTGCAGCA
AGCCCAGGCACTTCGGGCTGTCCCCGGCCCCCAGAGCCCGGGCACCGTGGTCATCATCGCCATCCTGTCT
ATCCTCCTGGCCGTCCTCCTCACGGTCCTCCTGGCTGTGCTCATATACACCTGCTTCAACAGCTGCAGGA
GCACTTCCCTATCAGGCCCAGAGGAGGCAGGGAGTGTGAGAAGATACACCACGCACCTCGCGTTCAGCAC
TCCTGCCGAGGGGGCTTCCTGA

Translation (263 aa):
MDNSWRLGPAIGLSAGQSQLLVSLLLLLTRVQPGTDVAAPEHISYVPQLSNDTLAGRLTLSTFTLEQPLG
QFSSHNISDLDTIWLVVALSNATQSFTAPRTNQDIPAPANFSQRGYYLTLRANRVLYQTRGQLHVLRVGN
DTHCQPTKIGCNHPLPGPGPYRVKFLVMNDEGPVAETKWSSDTRLQQAQALRAVPGPQSPGTVVIIAILS
ILLAVLLTVLLAVLIYTCFNSCRSTSLSGPEEAGSVRRYTTHLAFSTPAEGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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