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Report for CCDS47815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47815.1 Public Homo sapiens 8 SLC18A1 24 110 108 CCDS HistoryNCBI Gene:6570Re-query CCDS DB by CCDS ID:47815.1Re-query CCDS DB by GeneID:6570See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 47815.1
This variant represents the VMAT1delta15 variant described in PMID:16326835. There are no publicly available transcripts representing it, but it was cloned and characterized in the above publication.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47815.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381608.8 ENSP00000371021.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381608.8Link to Ensembl Protein Viewer:ENSP00000371021.4Re-query CCDS DB by Nucleotide ID:ENST00000381608Re-query CCDS DB by Protein ID:ENSP00000371021
Original member Current member EBI ENST00000437980.3 ENSP00000413361.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437980.3Link to Ensembl Protein Viewer:ENSP00000413361.1Re-query CCDS DB by Nucleotide ID:ENST00000437980Re-query CCDS DB by Protein ID:ENSP00000413361
Original member Current member NCBI NM_001142325.2 NP_001135797.1 Accepted alive Link to Nucleotide Sequence:NM_001142325.2Link to Protein Sequence:NP_001135797.1Re-query CCDS DB by Nucleotide ID:NM_001142325Re-query CCDS DB by Protein ID:NP_001135797Link to BLAST:NP_001135797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135797.1 472 P54219-2 472 100% 0 0

Chromosomal Locations for CCDS 47815.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 20145788 20145876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20147603 20147722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20148007 20148070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20149676 20149727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20150666 20150744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20164869 20164964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20165047 20165107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20171103 20171146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20171405 20171494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20173036 20173128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20174361 20174444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20178435 20178493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20179121 20179484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20180841 20180964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGCTCCGGACCATTCTGGATGCTCCCCAGCGGTTGCTGAAGGAGGGGAGAGCGTCCCGGCAGCTGGTGC
TGGTGGTGGTATTCGTCGCTTTGCTCCTGGACAACATGCTGTTTACTGTGGTGGTGCCAATTGTGCCCAC
CTTCCTATATGACATGGAGTTCAAAGAAGTCAACTCTTCTCTGCACCTCGGCCATGCCGGAAGTTCCCCA
CATGCCCTCGCCTCTCCTGCCTTTTCCACCATCTTCTCCTTCTTCAACAACAACACCGTGGCTGTTGAAG
AAAGCGTACCTAGTGGAATAGCATGGATGAATGACACTGCCAGCACCATCCCACCTCCAGCCACTGAAGC
CATCTCAGCTCATAAAAACAACTGCTTGCAAGGCACAGGTTTCTTGGAGGAAGAGATTACCCGGGTCGGG
GTTCTGTTTGCTTCAAAGGCTGTGATGCAACTTCTGGTCAACCCATTCGTGGGCCCTCTCACCAACAGGA
TTGGATATCATATCCCCATGTTTGCTGGCTTTGTTATCATGTTTCTCTCCACAGTTATGTTTGCTTTTTC
TGGGACCTATACTCTACTCTTTGTGGCCCGAACCCTTCAAGGCATTGGATCTTCATTTTCATCTGTTGCA
GGTCTTGGAATGCTGGCCAGTGTCTACACTGATGACCATGAGAGAGGACGAGCCATGGGAACTGCTCTGG
GGGGCCTGGCCTTGGGGTTGCTGGTGGGAGCTCCCTTTGGAAGTGTAATGTACGAGTTTGTTGGGAAGTC
TGCACCCTTCCTCATCCTGGCCTTCCTGGCACTACTGGATGGAGCACTCCAGCTTTGCATCCTACAGCCT
TCCAAAGTCTCTCCTGAGAGTGCCAAGGGGACTCCCCTCTTTATGCTTCTCAAAGACCCTTACATCCTGG
TGGCTGCAGGGTCCATCTGCTTTGCCAACATGGGGGTGGCCATCCTGGAGCCCACACTGCCCATCTGGAT
GATGCAGACCATGTGCTCCCCCAAGTGGCAGCTGGGTCTAGCTTTCTTGCCTGCCAGTGTGTCCTACCTC
ATTGGCACCAACCTCTTTGGTGTGTTGGCCAACAAGATGGGTCGGTGGCTGTGTTCCCTAATCGGGATGC
TGGTAGTAGGTACCAGCTTGCTCTGTGTTCCTCTGGCTCACAATATTTTTGGTCTCATTGGCCCCAATGC
AGGGCTTGGCCTTGCCATAGGCATGGTGGATTCTTCTATGATGCCCATCATGGGGCACCTGGTGGATCTA
CGCCACACCTCGGTGTATGGGAGTGTCTACGCCATCGCTGATGTGGCTTTTTGCATGGGCTTTGCTATAG
GCTATTCTGAGTCAGGACTGCCCCATGGAGACCCGGATGTATGCAACCCAGAAGCCCACGAAGGAATTTC
CTCTGGGGGAGGACAGTGA

Translation (472 aa):
MLRTILDAPQRLLKEGRASRQLVLVVVFVALLLDNMLFTVVVPIVPTFLYDMEFKEVNSSLHLGHAGSSP
HALASPAFSTIFSFFNNNTVAVEESVPSGIAWMNDTASTIPPPATEAISAHKNNCLQGTGFLEEEITRVG
VLFASKAVMQLLVNPFVGPLTNRIGYHIPMFAGFVIMFLSTVMFAFSGTYTLLFVARTLQGIGSSFSSVA
GLGMLASVYTDDHERGRAMGTALGGLALGLLVGAPFGSVMYEFVGKSAPFLILAFLALLDGALQLCILQP
SKVSPESAKGTPLFMLLKDPYILVAAGSICFANMGVAILEPTLPIWMMQTMCSPKWQLGLAFLPASVSYL
IGTNLFGVLANKMGRWLCSLIGMLVVGTSLLCVPLAHNIFGLIGPNAGLGLAIGMVDSSMMPIMGHLVDL
RHTSVYGSVYAIADVAFCMGFAIGYSESGLPHGDPDVCNPEAHEGISSGGGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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