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Report for CCDS47828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47828.1 Public Homo sapiens 8 SLC25A37 24 110 108 CCDS HistoryNCBI Gene:51312Re-query CCDS DB by CCDS ID:47828.1Re-query CCDS DB by GeneID:51312See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519973.6 ENSP00000429200.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000519973.6Link to Ensembl Protein Viewer:ENSP00000429200.1Re-query CCDS DB by Nucleotide ID:ENST00000519973Re-query CCDS DB by Protein ID:ENSP00000429200
Original member Current member NCBI NM_016612.4 NP_057696.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016612.4Link to Protein Sequence:NP_057696.2Re-query CCDS DB by Nucleotide ID:NM_016612Re-query CCDS DB by Protein ID:NP_057696Link to BLAST:NP_057696.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057696.2 338 Q9NYZ2-1 338 100% 0 0

Chromosomal Locations for CCDS 47828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23529003 23529212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23566108 23566336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23568322 23568378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23571335 23571855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGAGCTGCGCAGCGGGAGCGTGGGCAGCCAGGCGGTGGCGCGGAGGATGGATGGGGACAGCCGAGATG
GCGGCGGCGGCAAGGACGCCACCGGGTCGGAGGACTACGAGAACCTGCCGACTAGCGCCTCCGTGTCCAC
CCACATGACAGCAGGAGCGATGGCCGGGATCCTGGAGCACTCGGTCATGTACCCGGTGGACTCGGTGAAG
ACACGAATGCAGAGTTTGAGTCCAGATCCCAAAGCCCAGTACACAAGTATCTACGGAGCCCTCAAGAAAA
TCATGCGGACCGAAGGCTTCTGGAGGCCCTTGCGAGGCGTCAACGTCATGATCATGGGTGCAGGGCCGGC
CCATGCCATGTATTTTGCCTGCTATGAAAACATGAAAAGGACTTTAAATGACGTTTTCCACCACCAAGGA
AACAGCCACCTAGCCAACGGGATAGCTGGGAGTATGGCCACCCTGCTCCACGATGCGGTAATGAATCCAG
CAGAAGTGGTGAAGCAGCGCTTGCAGATGTACAACTCGCAGCACCGGTCAGCAATCAGCTGCATCCGGAC
GGTGTGGAGGACCGAGGGGTTGGGGGCCTTCTACCGGAGCTACACCACGCAGCTGACCATGAACATCCCC
TTCCAGTCCATCCACTTCATCACCTATGAGTTCCTGCAGGAGCAGGTCAACCCCCACCGGACCTACAACC
CGCAGTCCCACATCATCTCAGGCGGGCTGGCCGGGGCCCTCGCCGCGGCCGCCACGACCCCCCTGGACGT
CTGTAAGACCCTTCTGAACACTCAGGAGAACGTGGCCCTCTCGCTGGCCAACATCAGCGGCCGGCTGTCG
GGTATGGCCAATGCCTTCCGGACGGTGTACCAGCTCAACGGCCTGGCCGGCTACTTCAAAGGCATCCAGG
CGCGTGTCATCTACCAGATGCCCTCCACCGCCATTTCTTGGTCTGTCTATGAGTTCTTCAAGTACTTTCT
CACCAAGCGCCAGCTGGAAAATCGAGCTCCATACTAA

Translation (338 aa):
MELRSGSVGSQAVARRMDGDSRDGGGGKDATGSEDYENLPTSASVSTHMTAGAMAGILEHSVMYPVDSVK
TRMQSLSPDPKAQYTSIYGALKKIMRTEGFWRPLRGVNVMIMGAGPAHAMYFACYENMKRTLNDVFHHQG
NSHLANGIAGSMATLLHDAVMNPAEVVKQRLQMYNSQHRSAISCIRTVWRTEGLGAFYRSYTTQLTMNIP
FQSIHFITYEFLQEQVNPHRTYNPQSHIISGGLAGALAAAATTPLDVCKTLLNTQENVALSLANISGRLS
GMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYFLTKRQLENRAPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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