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Report for CCDS47860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47860.1 Public Homo sapiens 8 PLAG1 24 110 108 CCDS HistoryNCBI Gene:5324Re-query CCDS DB by CCDS ID:47860.1Re-query CCDS DB by GeneID:5324See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423799.6 ENSP00000404067.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423799.6Link to Ensembl Protein Viewer:ENSP00000404067.2Re-query CCDS DB by Nucleotide ID:ENST00000423799Re-query CCDS DB by Protein ID:ENSP00000404067
Original member Current member NCBI NM_001114635.2 NP_001108107.1 Accepted alive Link to Nucleotide Sequence:NM_001114635.2Link to Protein Sequence:NP_001108107.1Re-query CCDS DB by Nucleotide ID:NM_001114635Re-query CCDS DB by Protein ID:NP_001108107Link to BLAST:NP_001108107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108107.1 418 Q6DJT9-2 418 100% 0 0

Chromosomal Locations for CCDS 47860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56166243 56167499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCTACTCATTCTCCTGAGAAAACCCACAAGTGTAATTATTGTGAGAAAATGTTTCACCGGAAAGATC
ATCTGAAGAATCACCTCCATACACACGACCCTAACAAAGAGACGTTTAAGTGCGAAGAATGTGGCAAGAA
CTACAATACCAAGCTTGGATTTAAACGTCACTTGGCCTTGCATGCCGCAACAAGTGGTGACCTCACCTGT
AAGGTATGTTTGCAAACTTTTGAAAGCACGGGAGTGCTTCTGGAGCACCTTAAATCTCATGCAGGCAAGT
CGTCTGGTGGGGTTAAAGAAAAAAAGCACCAGTGCGAACATTGTGATCGCCGGTTCTACACCCGAAAGGA
TGTCCGGAGACACATGGTGGTGCACACTGGAAGAAAGGACTTCCTCTGTCAGTATTGTGCACAGAGATTT
GGGCGAAAGGATCACCTGACTCGACATATGAAGAAGAGTCACAATCAAGAGCTTCTGAAGGTCAAAACAG
AACCAGTGGATTTCCTTGACCCATTTACCTGCAATGTGTCTGTGCCTATAAAAGACGAGCTCCTTCCGGT
GATGTCCTTACCTTCCAGTGAACTGTTATCAAAGCCATTCACAAACACTTTGCAGTTAAACCTCTACAAC
ACTCCATTTCAGTCCATGCAGAGCTCGGGATCTGCCCACCAAATGATCACAACTTTACCTTTGGGAATGA
CATGCCCAATAGATATGGACACTGTTCATCCCTCTCACCACCTTTCTTTCAAATATCCGTTCAGTTCTAC
CTCATATGCAATTTCTATTCCTGAAAAAGAACAGCCATTAAAGGGGGAAATTGAGAGTTACCTGATGGAG
TTACAAGGTGGCGTGCCCTCTTCATCCCAAGATTCTCAAGCATCGTCATCATCTAAGCTAGGGTTGGATC
CTCAGATTGGGTCCCTAGATGATGGTGCAGGAGACCTCTCCCTATCCAAAAGCTCTATCTCCATCAGTGA
CCCCCTAAACACACCAGCATTGGATTTTTCTCAGTTGTTTAATTTCATACCTTTAAATGGTCCTCCCTAT
AATCCTCTATCAGTGGGGAGCCTTGGAATGAGCTATTCCCAGGAAGAAGCACATTCTTCTGTTTCCCAGC
TCCCCCCACAAACACAGGATCTTCAGGATCCTGCAAACACTATAGGGCTTGGGTCTCTGCACTCACTGTC
AGCAGCTTTCACCAGCAGTTTAAGCACAAGTACCACCCTCCCACGTTTCCATCAAGCTTTTCAGTAG

Translation (418 aa):
MATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHDPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTC
KVCLQTFESTGVLLEHLKSHAGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRF
GRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELLSKPFTNTLQLNLYN
TPFQSMQSSGSAHQMITTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQPLKGEIESYLME
LQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDPLNTPALDFSQLFNFIPLNGPPY
NPLSVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANTIGLGSLHSLSAAFTSSLSTSTTLPRFHQAFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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