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Report for CCDS47926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47926.1 Public Homo sapiens 8 LY6H 24 110 108 CCDS HistoryNCBI Gene:4062Re-query CCDS DB by CCDS ID:47926.1Re-query CCDS DB by GeneID:4062See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47926.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342752.9 ENSP00000342711.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342752.9Link to Ensembl Protein Viewer:ENSP00000342711.4Re-query CCDS DB by Nucleotide ID:ENST00000342752Re-query CCDS DB by Protein ID:ENSP00000342711
Original member Current member EBI ENST00000414417.6 ENSP00000399485.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414417.6Link to Ensembl Protein Viewer:ENSP00000399485.2Re-query CCDS DB by Nucleotide ID:ENST00000414417Re-query CCDS DB by Protein ID:ENSP00000399485
Original member Current member NCBI NM_001130478.2 NP_001123950.1 Accepted alive Link to Nucleotide Sequence:NM_001130478.2Link to Protein Sequence:NP_001123950.1Re-query CCDS DB by Nucleotide ID:NM_001130478Re-query CCDS DB by Protein ID:NP_001123950Link to BLAST:NP_001123950.1
Original member Current member NCBI NM_001135655.2 NP_001129127.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135655.2Link to Protein Sequence:NP_001129127.1Re-query CCDS DB by Nucleotide ID:NM_001135655Re-query CCDS DB by Protein ID:NP_001129127Link to BLAST:NP_001129127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123950.1 161 O94772-2 161 100% 0 0
NP_001129127.1 161 O94772-2 161 100% 0 0

Chromosomal Locations for CCDS 47926.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143158250 143158485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143158803 143158922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143159582 143159709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143160198 143160199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGCTTGCGCCCCAGAGGACCCGCGCCCCAAGCCCCCGCGCCGCCCCCAGGCCCACCCGGAGCATGCTGC
CTGCAGCCATGAAGGGCCTCGGCCTGGCGCTGCTGGCCGTCCTGCTGTGCTCGGCGCCCGCTCATGGCCT
GTGGTGCCAGGACTGCACCCTGACCACCAACTCCAGCCATTGCACCCCAAAGCAGTGCCAGCCGTCCGAC
ACGGTGTGTGCCAGTGTCCGAATCACCGATCCCAGCAGCAGCAGGAAGGATCACTCGGTGAACAAGATGT
GTGCCTCCTCCTGTGACTTCGTTAAGCGACACTTTTTCTCAGACTATCTGATGGGGTTTATTAACTCTGG
GATCTTAAAGGTCGACGTGGACTGCTGCGAGAAGGATTTGTGCAATGGGGCGGCAGGGGCAGGGCACAGC
CCCTGGGCCCTGGCCGGGGGGCTCCTGCTCAGCCTGGGGCCTGCCCTCCTCTGGGCTGGGCCCTGA

Translation (161 aa):
MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSD
TVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHS
PWALAGGLLLSLGPALLWAGP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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