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Report for CCDS48065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48065.1 Public Homo sapiens 9 STPG3 24 110 108 CCDS HistoryNCBI Gene:441476Re-query CCDS DB by CCDS ID:48065.1Re-query CCDS DB by GeneID:441476See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412566.6 ENSP00000391218.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412566.6Link to Ensembl Protein Viewer:ENSP00000391218.1Re-query CCDS DB by Nucleotide ID:ENST00000412566Re-query CCDS DB by Protein ID:ENSP00000391218
Original member Current member NCBI NM_001004353.4 NP_001004353.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004353.4Link to Protein Sequence:NP_001004353.2Re-query CCDS DB by Nucleotide ID:NM_001004353Re-query CCDS DB by Protein ID:NP_001004353Link to BLAST:NP_001004353.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004353.2 308 Q8N7X2-4 308 100% 0 0

Chromosomal Locations for CCDS 48065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137251287 137251396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137251738 137251895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137252001 137252135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137252437 137252525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137252662 137252965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137253115 137253245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGATGAATTCTGACCAGAAGGCAGTGAAATTCCTGGCAAATTTTTACATCAATGGAGGCAAACACTGGA
CCCATGGTCACCTGAGGCAGACACAACCAGAGCCCACCCAGCCCAAGGCATCTGTGCTGTTGTTGGGCCC
GGAGCCGGGGATGGCCTGGGATGAGACACAGCCCCCAAAGATGAAGGAGATCCCAGTTGGCCTCAGGTTA
CAGACGGGCACCCCCCAGGAGTCCCTGCCCACCTACACCCAGACCCTGAGGGAACTATTGCTGGAGCAAC
GCCCCCTGATCACAGCTGACCTGGAAGTCCCCAGCCCCACCAGGTACCAGGTGCCGAGCCCGTCCGTACG
AGAGTCCTCCCCACACCCCCACTACAGCATCGGCTGCAAGCACCAGGGCCGAGAGGGCGGTGGCCGCAGG
GCATGGCAGACTTTGTGGTTCCAGAGCGAAAGCCCCTTCACGCAGAAAGCTGACTTCGACCAAGAGCAAA
AGTGGCCCTCGCCAGCCCACTACCAGCTGCTCAGCCGGCCCGCCTTCCCCGCCTTCAGCTTCAGAGGCTG
CCACTCCGCTTCCAAGACACCTGAAGGCCACACCCACCTAGGGCTGCCTGGGGCTAGGGGGCTGGGCCTC
AGGGTGCAGCCCCAGTCCCTGCTTCAGGCCTCTTTGCAGGCACCTGGCAAGAGATGCCCTGGCCCCAACA
CCTACAATATCCTTCCTGGGAGCCGCCTGCAGAGCCCCCGCTCGCCGGCCTTCTCGATGAGCCGCTCCCC
TGCGTTCACCTCCTGGCTCAGCACCTCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGGACTGCAAC
TCACGCTTCCCTTCGGCGCCTGGCGTGGTCATCCAGGGTGTACGCAGACCCAAGCGCCACGACACAGGCC
CCTTCTGCACGCTCTAG

Translation (308 aa):
MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRL
QTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHPHYSIGCKHQGREGGGRR
AWQTLWFQSESPFTQKADFDQEQKWPSPAHYQLLSRPAFPAFSFRGCHSASKTPEGHTHLGLPGARGLGL
RVQPQSLLQASLQAPGKRCPGPNTYNILPGSRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCN
SRFPSAPGVVIQGVRRPKRHDTGPFCTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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