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Report for CCDS48082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48082.1 Public Homo sapiens X TRAPPC2 24 110 108 CCDS HistoryNCBI Gene:6399Re-query CCDS DB by CCDS ID:48082.1Re-query CCDS DB by GeneID:6399See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48082.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359680.9 ENSP00000352708.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359680.9Link to Ensembl Protein Viewer:ENSP00000352708.5Re-query CCDS DB by Nucleotide ID:ENST00000359680Re-query CCDS DB by Protein ID:ENSP00000352708
Original member Current member EBI ENST00000380579.6 ENSP00000369953.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380579.6Link to Ensembl Protein Viewer:ENSP00000369953.1Re-query CCDS DB by Nucleotide ID:ENST00000380579Re-query CCDS DB by Protein ID:ENSP00000369953
Original member Current member EBI ENST00000458511.7 ENSP00000392495.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458511.7Link to Ensembl Protein Viewer:ENSP00000392495.3Re-query CCDS DB by Nucleotide ID:ENST00000458511Re-query CCDS DB by Protein ID:ENSP00000392495
Original member Current member EBI ENST00000518847.2 ENSP00000428900.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518847.2Link to Ensembl Protein Viewer:ENSP00000428900.2Re-query CCDS DB by Nucleotide ID:ENST00000518847Re-query CCDS DB by Protein ID:ENSP00000428900
Original member Current member EBI ENST00000683569.1 ENSP00000508155.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683569.1Link to Ensembl Protein Viewer:ENSP00000508155.1Re-query CCDS DB by Nucleotide ID:ENST00000683569Re-query CCDS DB by Protein ID:ENSP00000508155
Original member Current member NCBI NM_001011658.4 NP_001011658.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001011658.4Link to Protein Sequence:NP_001011658.1Re-query CCDS DB by Nucleotide ID:NM_001011658Re-query CCDS DB by Protein ID:NP_001011658Link to BLAST:NP_001011658.1
Original member Current member NCBI NM_014563.6 NP_055378.1 Accepted alive Link to Nucleotide Sequence:NM_014563.6Link to Protein Sequence:NP_055378.1Re-query CCDS DB by Nucleotide ID:NM_014563Re-query CCDS DB by Protein ID:NP_055378Link to BLAST:NP_055378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011658.1 140 P0DI81 140 100% 0 0
NP_055378.1 140 P0DI81 140 100% 0 0

Chromosomal Locations for CCDS 48082.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 13714407 13714505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13716004 13716089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13716534 13716678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13719871 13719963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCTGGGAGCTTCTACTTTGTAATTGTTGGCCACCATGATAATCCAGTTTTTGAAATGGAGTTTTTGC
CAGCTGGGAAGGCAGAATCCAAAGACGACCATCGTCATCTGAACCAGTTCATAGCTCATGCTGCTCTCGA
CCTCGTAGATGAGAACATGTGGCTATCGAACAACATGTACTTGAAAACTGTGGACAAGTTCAACGAGTGG
TTTGTGTCGGCATTTGTCACTGCGGGGCATATGAGGTTTATTATGCTTCATGACATAAGACAAGAAGATG
GAATAAAGAACTTCTTTACTGATGTTTATGATTTATATATAAAGTTTTCAATGAATCCATTTTATGAACC
CAATTCTCCTATTCGATCAAGTGCATTTGACAGAAAAGTTCAGTTTCTTGGGAAGAAACACCTTTTAAGC
TGA

Translation (140 aa):
MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEW
FVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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