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Report for CCDS48130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48130.1 Public Homo sapiens X IQSEC2 24 110 108 CCDS HistoryNCBI Gene:23096Re-query CCDS DB by CCDS ID:48130.1Re-query CCDS DB by GeneID:23096See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642864.1 ENSP00000495726.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642864.1Link to Ensembl Protein Viewer:ENSP00000495726.1Re-query CCDS DB by Nucleotide ID:ENST00000642864Re-query CCDS DB by Protein ID:ENSP00000495726
Original member Current member EBI ENST00000674510.1 ENSP00000502054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674510.1Link to Ensembl Protein Viewer:ENSP00000502054.1Re-query CCDS DB by Nucleotide ID:ENST00000674510Re-query CCDS DB by Protein ID:ENSP00000502054
Original member Current member NCBI NM_001111125.3 NP_001104595.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001111125.3Link to Protein Sequence:NP_001104595.1Re-query CCDS DB by Nucleotide ID:NM_001111125Re-query CCDS DB by Protein ID:NP_001104595Link to BLAST:NP_001104595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104595.1 1488 Q5JU85-2 1488 100% 0 0

Chromosomal Locations for CCDS 48130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53234219 53235184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53235783 53235832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53236322 53236495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53238145 53238306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53239195 53239294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53241784 53241909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53243332 53243471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53246969 53247135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53248114 53248236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53248721 53248882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53250279 53251174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53254530 53254931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53255800 53256061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53291895 53291924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53320417 53321123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4467 nt):
ATGGAGGCGGGGTCGGGGCCCCCGGGCGGCCCGGGATCCGAGAGCCCAAATCGGGCCGTGGAGTACCTGC
TGGAGCTGAACAACATCATCGAGAGCCAGCAGCAGCTGCTGGAAACCCAGCGGCGGCGCATCGAGGAGCT
GGAGGGCCAGCTGGACCAGCTCACCCAGGAGAACCGCGACCTGCGAGAGGAGAGCCAGCTGCACCGCGGG
GAGCTGCACCGGGACCCCCACGGCGCGCGGGATAGCCCGGGCCGCGAGAGCCAGTACCAGAACCTGCGCG
AGACCCAGTTCCACCACCGCGAGCTGCGGGAGAGCCAGTTCCACCAGGCGGCCCGGGACGTGGGCTACCC
GAACCGGGAAGGCGCCTACCAGAATCGGGAGGCTGTGTATCGGGACAAGGAGCGGGACGCCTCCTACCCG
CTCCAGGACACTACCGGTTACACAGCCCGCGAGCGTGACGTGGCCCAGTGCCACCTGCACCACGAGAACC
CAGCCCTGGGTCGCGAGCGTGGCGGGCGGGAGGCCGGGCCGGCGCACCCGGGCCGCGAGAAGGAAGCGGG
CTATTCGGCGGCGGTGGGCGTGGGGCCGCGGCCACCGCGGGAGCGGGGCCAGCTGAGCCGTGGCGCATCC
AGGAGCTCCAGTCCCGGCGCCGGCGGAGGCCACAGCACCAGTACCAGCACCAGCCCGGCCACGACCCTCC
AGAGAAAATCTGATGGTGAGAATTCCAGAACAGTCAGTGTGGAGGGTGATGCCCCAGGCAGTGACCTGAG
CACAGCGGTTGATAGTCCTGGGAGCCAACCCCCCTACCGGCTGAGCCAGCTGCCCCCCTCCAGCAGCCAC
ATGGGGGGCCCCCCTGCTGGAGTGGGCCTTCCCTGGGCTCAGCGGGCACGCCTCCAGCCAGCCAGTGTCG
CCCTGAGGAAGCAGGAGGAGGAGGAGATAAAGCGCTCCAAGGCCCTATCGGACAGCTATGAACTCTCCAC
AGACCTGCAGGACAAGAAGGTGGAAATGCTGGAGAGGAAGTATGGGGGCTCCTTCCTGAGCCGCAGGGCT
GCCAGGACCATCCAGACAGCCTTCCGCCAGTACCGCATGAACAAGAACTTTGAGCGGCTACGCAGCTCAG
CCTCAGAGAGCCGCATGTCCCGCCGCATCATCCTTTCCAACATGCGGATGCAGTTCTCCTTTGAGGAGTA
TGAGAAGGCACAGAACCCCGCGTACTTCGAGGGCAAGCCTGCCTCGCTGGACGAGGGTGCCATGGCTGGT
GCCCGGAGCCACCGGCTTGAACGGGGGCTCCCATATGGAGGCTCCTGTGGTGGGGGCATCGATGGTGGTG
GAAGCTCCGTCACCACATCTGGAGAGTTTTCTAATGACATCACAGAACTTGAGGACTCCTTCTCCAAACA
GGTAAAGTCTCTGGCTGAATCCATCGACGAAGCCCTGAACTGCCACCCGTCAGGGCCCATGTCTGAGGAG
CCAGGGTCAGCCCAGCTGGAGAAGCGGGAGTCAAAGGAACAGCAAGAGGACAGCTCAGCCACATCCTTCA
GTGATCTTCCCCTCTACCTGGATGACACAGTTCCCCAACAATCCCCTGAGCGACTGCCCAGCACAGAACC
CCCACCCCAGGGCCGGCCCGAGTTCTGGGCGCCAGCCCCTCTCCCGCCAGTTCCTCCACCAGTGCCATCA
GGAACCCGGGAAGACGGTAGCCGTGAGGAAGGCACTCGCAGGGGTCCCGGGTGCTTGGAGTGCCGGGATT
TCCGGCTGCGGGCTGCCCACCTTCCCCTGCTTACCATTGAGCCTCCTAGTGACAGCTCCGTGGACCTGAG
TGACCGCTCAGATCGCGGCTCTGTCCACCGCCAGCTGGTGTATGAGGCTGATGGCTGCAGCCCCCATGGG
ACCCTGAAGCACAAGGGGCCACCAGGCAGGGCCCCGATCCCACACCGCCACTACCCAGCCCCTGAAGGCC
CAGCCCCAGCCCCACCAGGGCCCCTGCCACCAGCCCCCAACAGTGGCACTGGGCCCAGTGGTGTGGCTGG
GGGTCGGAGGTTGGGGAAGTGCGAGGCAGCAGGCGAGAACTCTGATGGTGGAGATAACGAGAGCCTTGAG
AGCTCCAGCAATTCCAATGAGACCATCAACTGCAGCTCCGGCTCCTCTTCTCGGGACAGTCTAAGGGAGC
CTCCGGCTACCGGCCTGTGCAAGCAGACTTACCAGCGGGAGACAAGGCATAGCTGGGACTCGCCAGCTTT
CAACAATGATGTGGTCCAGAGGCGGCACTACCGAATCGGCCTCAACCTCTTCAACAAGAAGCCAGAGAAG
GGTATCCAGTATCTGATCGAGCGGGGCTTCCTGTCAGACACACCGGTGGGAGTGGCTCACTTCATCCTGG
AGCGGAAAGGCCTCAGCCGGCAGATGATAGGGGAATTCCTAGGGAACCGGCAGAAGCAGTTCAACAGAGA
CGTGTTGGACTGTGTGGTGGATGAGATGGACTTCTCCTCCATGGATCTGGATGATGCGCTCCGGAAGTTC
CAGTCCCATATCCGGGTTCAGGGTGAGGCCCAGAAAGTGGAGCGACTCATCGAAGCCTTCAGCCAGCGGT
ACTGTGTCTGTAACCCAGCCCTCGTGCGCCAGTTCCGGAACCCAGACACCATCTTCATCCTTGCTTTTGC
CATCATCCTCCTCAATACCGACATGTACAGTCCCAGCGTCAAAGCTGAACGAAAGATGAAACTAGATGAC
TTCATCAAGAACCTGAGAGGGGTTGACAATGGTGAAGACATCCCCCGAGACCTCCTGGTGGGCATCTACC
AGCGCATCCAGGGGCGTGAACTGCGGACCAACGATGACCATGTGTCCCAGGTGCAGGCTGTGGAGCGCAT
GATTGTTGGAAAGAAACCAGTCCTGTCTCTCCCTCACCGTCGACTGGTTTGCTGCTGCCAGCTCTACGAG
GTGCCAGATCCAAACCGCCCCCAGAGGCTAGGGTTGCATCAGCGGGAGGTCTTCCTCTTCAATGATCTCC
TTGTGGTCACCAAAATTTTCCAGAAGAAGAAGATCTTGGTGACGTACAGTTTCCGTCAGTCTTTCCCCCT
CGTGGAAATGCACATGCAGCTCTTCCAGAATTCATATTACCAGTTTGGGATCAAGTTGCTGTCTGCAGTA
CCTGGTGGGGAGCGAAAAGTCCTCATCATCTTCAATGCCCCCAGCCTCCAGGACCGGCTGCGCTTTACAT
CCGACCTGCGCGAGTCCATTGCGGAGGTGCAGGAGATGGAGAAATACCGTGTGGAGTCGGAGCTGGAGAA
GCAGAAAGGTATGATGCGGCCTAACGCCTCACAGCCTGGAGGGGCCAAGGACTCAGTGAATGGGACGATG
GCCCGCAGTAGCCTGGAGGACACTTACGGGGCAGGCGATGGGCTCAAACGGGGCGCACTCAGCAGTTCCC
TGCGAGACCTCTCTGATGCAGGGAAGCGGGGGCGGCGTAACAGCGTGGGATCGCTGGACAGCACCATCGA
AGGGTCTGTTATTAGCAGTCCACGCCCTCACCAGAGGATGCCACCTCCGCCCCCACCCCCGCCGCCAGAG
GAGTACAAGAGCCAGAGGCCCGTCTCCAACTCCTCATCCTTCCTGGGCTCCCTATTTGGAAGCAAGCGGG
GCAAGGGGCCCTTCCAGATGCCACCACCGCCAACAGGCCAGGCCTCTGCCTCCTCTTCATCTGCTTCTTC
CACGCACCACCACCACCACCACCACCATCATGGCCATAGCCACGGTGGCCTGGGGGTGCTGCCTGATGGG
CAGTCCAAGCTCCAGGCCCTGCATGCCCAGTATTGCCAAGGACCGGGCCCTGCCCCGCCACCCTACCTCC
CACCCCAGCAGCCCTCTCTTCCCCCACCTCCCCAGCAGCCCCCACCCTTGCCCCAGCTGGGCTCCATTCC
ACCGCCTCCCGCCTCAGCCCCACCTGTGGGGCCACATCGCCACTTCCACGCCCATGGCCCAGTCCCAGGG
CCCCAACACTATACCTTGGGCCGGCCAGGCAGGGCACCCAGACGGGGGGCTGGAGGACACCCTCAGTTTG
CTCCACATGGCCGCCACCCCCTGCACCAGCCCACATCCCCACTGCCCCTGTACAGTCCTGCCCCCCAGCA
CCCTCCAGCCCACAAACAGGGCCCTAAGCACTTCATCTTCAGCCACCACCCACAGATGATGCCAGCAGCA
GGCGCGGCTGGGGGCCCTGGATCCCGGCCACCAGGGGGCTCCTACTCCCACCCCCACCACCCCCAGTCAC
CATTGTCACCACACTCACCCATCCCACCCCACCCCTCCTATCCACCCCTCCCCCCACCCTCCCCTCACAC
CCCGCACTCACCCCTTCCACCCACCTCCCCCCATGGCCCGCTGCACGCCTCTGGGCCCCCTGGCACAGCC
AACCCCCCCAGTGCAAACCCCAAGGCCAAGCCAAGCCGGATCAGCACCGTGGTCTGA

Translation (1488 aa):
MEAGSGPPGGPGSESPNRAVEYLLELNNIIESQQQLLETQRRRIEELEGQLDQLTQENRDLREESQLHRG
ELHRDPHGARDSPGRESQYQNLRETQFHHRELRESQFHQAARDVGYPNREGAYQNREAVYRDKERDASYP
LQDTTGYTARERDVAQCHLHHENPALGRERGGREAGPAHPGREKEAGYSAAVGVGPRPPRERGQLSRGAS
RSSSPGAGGGHSTSTSTSPATTLQRKSDGENSRTVSVEGDAPGSDLSTAVDSPGSQPPYRLSQLPPSSSH
MGGPPAGVGLPWAQRARLQPASVALRKQEEEEIKRSKALSDSYELSTDLQDKKVEMLERKYGGSFLSRRA
ARTIQTAFRQYRMNKNFERLRSSASESRMSRRIILSNMRMQFSFEEYEKAQNPAYFEGKPASLDEGAMAG
ARSHRLERGLPYGGSCGGGIDGGGSSVTTSGEFSNDITELEDSFSKQVKSLAESIDEALNCHPSGPMSEE
PGSAQLEKRESKEQQEDSSATSFSDLPLYLDDTVPQQSPERLPSTEPPPQGRPEFWAPAPLPPVPPPVPS
GTREDGSREEGTRRGPGCLECRDFRLRAAHLPLLTIEPPSDSSVDLSDRSDRGSVHRQLVYEADGCSPHG
TLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNSGTGPSGVAGGRRLGKCEAAGENSDGGDNESLE
SSSNSNETINCSSGSSSRDSLREPPATGLCKQTYQRETRHSWDSPAFNNDVVQRRHYRIGLNLFNKKPEK
GIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMDLDDALRKF
QSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMYSPSVKAERKMKLDD
FIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDDHVSQVQAVERMIVGKKPVLSLPHRRLVCCCQLYE
VPDPNRPQRLGLHQREVFLFNDLLVVTKIFQKKKILVTYSFRQSFPLVEMHMQLFQNSYYQFGIKLLSAV
PGGERKVLIIFNAPSLQDRLRFTSDLRESIAEVQEMEKYRVESELEKQKGMMRPNASQPGGAKDSVNGTM
ARSSLEDTYGAGDGLKRGALSSSLRDLSDAGKRGRRNSVGSLDSTIEGSVISSPRPHQRMPPPPPPPPPE
EYKSQRPVSNSSSFLGSLFGSKRGKGPFQMPPPPTGQASASSSSASSTHHHHHHHHHGHSHGGLGVLPDG
QSKLQALHAQYCQGPGPAPPPYLPPQQPSLPPPPQQPPPLPQLGSIPPPPASAPPVGPHRHFHAHGPVPG
PQHYTLGRPGRAPRRGAGGHPQFAPHGRHPLHQPTSPLPLYSPAPQHPPAHKQGPKHFIFSHHPQMMPAA
GAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPLHASGPPGTA
NPPSANPKAKPSRISTVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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