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Report for CCDS48169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48169.1 Public Homo sapiens X HS6ST2 24 110 108 CCDS HistoryNCBI Gene:90161Re-query CCDS DB by CCDS ID:48169.1Re-query CCDS DB by GeneID:90161See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370836.6 ENSP00000359873.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370836.6Link to Ensembl Protein Viewer:ENSP00000359873.2Re-query CCDS DB by Nucleotide ID:ENST00000370836Re-query CCDS DB by Protein ID:ENSP00000359873
Original member Current member NCBI NM_001394074.1 NP_001381003.1 Accepted alive Link to Nucleotide Sequence:NM_001394074.1Link to Protein Sequence:NP_001381003.1Re-query CCDS DB by Nucleotide ID:NM_001394074Re-query CCDS DB by Protein ID:NP_001381003Link to BLAST:NP_001381003.1
Original member Current member NCBI NM_147175.4 NP_671704.3 Accepted alive Link to Nucleotide Sequence:NM_147175.4Link to Protein Sequence:NP_671704.3Re-query CCDS DB by Nucleotide ID:NM_147175Re-query CCDS DB by Protein ID:NP_671704Link to BLAST:NP_671704.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381003.1 605 Q96MM7-1 605 100% 0 0
NP_671704.3 605 Q96MM7-1 605 100% 0 0

Chromosomal Locations for CCDS 48169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 132628223 132629093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132956808 132957326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132958175 132958602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGCACTGCCTGCGTGTGCAGTCCGGGAGTTCGAGCCGCCGCGGCAACCGGAGCGAGGAGCGCCCGTCC
GCACCACCTGTCCCCGCCGGCATTCCAGAGTAGAGGCCGAATTGGCAGCGAGCCGGCCCGGGTCGGTCGC
CGCCTCAGTTCGCGCGGGCCCTCCTAGGGGTGTGTCTCACGGATTCCACACCCGGCCGCTCCTGGACAAG
CCCCGAAAGGCGTCTTCTTCCCTGGCGGGAGCCGCGTGCGCCCCGCTTTTCGCGCTGCTGTCCCGGGGCC
GCCGCAGGCGGATGCACGTCCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCG
GGGCCTGGCCGCCCTGGGCCACTCGCTGAAGCACGTGCTCGGTGCGATCTTCTCCAAGATTTTCGGCCCC
ATGGCCAGCGTCGGGAACATGGATGAGAAATCCAACAAGCTGCTGCTAGCTTTGGTGATGCTCTTCCTAT
TTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGCAGGCGTTCAG
CTCCCCGGTGCCGGACCCGTACCGCTCGGAGGATGAGAGCTCCGCCAGGTTCGTGCCCCGCTACAATTTC
ACCCGCGGCGACCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGATGACCTGATCGTGTTCCTGCACA
TCCAGAAGACCGGGGGCACCACTTTCGGCCGCCACTTGGTGCGTAACATCCAGCTGGAGCAGCCGTGCGA
GTGCCGCGTGGGTCAGAAGAAATGCACTTGCCACCGGCCGGGTAAGCGGGAAACCTGGCTCTTCTCCAGG
TTCTCCACGGGCTGGAGCTGCGGGTTGCACGCCGACTGGACCGAGCTCACCAGCTGTGTGCCCTCCGTGG
TGGACGGCAAGCGCGACGCCAGGCTGAGACCGTCCAGGAACTTCCACTACATCACCATCCTCCGAGACCC
AGTGTCCCGGTACTTGAGTGAGTGGAGGCATGTCCAGAGAGGGGCAACATGGAAAGCATCCCTGCATGTC
TGCGATGGAAGGCCTCCAACCTCCGAAGAGCTGCCCAGCTGCTACACTGGCGATGACTGGTCTGGCTGCC
CCCTCAAAGAGTTTATGGACTGTCCCTACAATCTAGCCAACAACCGCCAGGTGCGCATGCTCTCCGACCT
GACCCTGGTAGGCTGCTACAACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAGGTCCTTCTGGAAAGT
GCCAAGTCAAATCTGAAGCACATGGCGTTCTTCGGCCTCACTGAGTTTCAGCGGAAGACCCAATATCTGT
TTGAGAAAACCTTCAACATGAACTTTATTTCGCCATTTACCCAGTATAATACCACTAGGGCCTCTAGTGT
AGAGATCAATGAGGAAATTCAAAAGCGTATTGAGGGACTGAATTTTCTGGATATGGAGTTGTACAGCTAT
GCCAAAGACCTTTTTTTGCAGAGGTATCAGTTTATGAGGCAGAAAGAGCATCAGGAGGCCAGGCGAAAGC
GTCAGGAACAACGCAAATTTCTGAAGGGAAGGCTCCTTCAGACCCATTTCCAGAGCCAGGGTCAGGGCCA
GAGCCAGAATCCGAATCAGAATCAGAGTCAGAACCCAAATCCGAATGCCAATCAGAACCTGACTCAGAAT
CTGATGCAGAATCTGACTCAGAGTTTGAGCCAGAAGGAGAACCGGGAAAGCCCGAAGCAGAACTCAGGCA
AGGAGCAGAATGATAACACCAGCAATGGCACCAACGACTACATAGGCAGTGTAGAGAAATGGCGTTAA

Translation (605 aa):
MALPACAVREFEPPRQPERGAPVRTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSHGFHTRPLLDK
PRKASSSLAGAACAPLFALLSRGRRRRMHVLRRRWDLGSLCRALLTRGLAALGHSLKHVLGAIFSKIFGP
MASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPDPYRSEDESSARFVPRYNF
TRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKRETWLFSR
FSTGWSCGLHADWTELTSCVPSVVDGKRDARLRPSRNFHYITILRDPVSRYLSEWRHVQRGATWKASLHV
CDGRPPTSEELPSCYTGDDWSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLES
AKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSY
AKDLFLQRYQFMRQKEHQEARRKRQEQRKFLKGRLLQTHFQSQGQGQSQNPNQNQSQNPNPNANQNLTQN
LMQNLTQSLSQKENRESPKQNSGKEQNDNTSNGTNDYIGSVEKWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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