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Report for CCDS48224.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48224.3 Public Mus musculus 1 Ube2w 23 108 98 CCDS HistoryNCBI Gene:66799Re-query CCDS DB by CCDS ID:48224.3Re-query CCDS DB by GeneID:66799See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 48224.2
The coding region has been updated to start at a downstream in-frame start codon that is supported by transcript and conservation data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48224.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117146.8 ENSMUSP00000112741.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117146.8Link to Ensembl Protein Viewer:ENSMUSP00000112741.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000117146Re-query CCDS DB by Protein ID:ENSMUSP00000112741
Original member Current member NCBI NM_025773.4 NP_080049.3 Accepted alive Link to Nucleotide Sequence:NM_025773.4Link to Protein Sequence:NP_080049.3Re-query CCDS DB by Nucleotide ID:NM_025773Re-query CCDS DB by Protein ID:NP_080049Link to BLAST:NP_080049.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080049.3 151 Q8VDW4 151 100% 0 0

Chromosomal Locations for CCDS 48224.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16571269 16571282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16581927 16582002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16585276 16585431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16597951 16598053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16602262 16602353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16619237 16619251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGCGTCAATGCAGAAACGACTACAAAAAGAACTGTTGGCTTTGCAGAATGACCCACCTCCTGGAATGA
CTTTAAATGAAAAGAGTGTTCAGAATTCAATCACGCAGTGGATCGTAGACATGGAAGGTGCACCAGGAAC
CTTATATGAAGGGGAAAAATTTCAACTTTTGTTTAAATTTAGTAGTCGATACCCTTTTGACTCTCCTCAG
GTCATGTTTACTGGTGAAAATATTCCCATTCATCCTCATGTGTATAGCAATGGTCATATCTGTTTATCCA
TTCTAACAGAAGACTGGTCCCCGGCGCTCTCAGTGCAGTCAGTCTGTCTCAGCATTATCAGCATGCTTTC
CAGCTGCAAAGAAAAGAGACGACCACCAGATAATTCCTTTTATGTGCGAACATGTAACAAGAATCCAAAG
AAAACAAAATGGTGGTATCATGATGACACTTGTTGA

Translation (151 aa):
MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQ
VMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPK
KTKWWYHDDTC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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