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Report for CCDS48443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48443.1 Public Mus musculus 1 Tstd1 23 108 98 CCDS HistoryNCBI Gene:226654Re-query CCDS DB by CCDS ID:48443.1Re-query CCDS DB by GeneID:226654See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171362.1 ENSMUSP00000132771.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171362.1Link to Ensembl Protein Viewer:ENSMUSP00000132771.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171362Re-query CCDS DB by Protein ID:ENSMUSP00000132771
Original member Current member NCBI NM_001164525.1 NP_001157997.1 Accepted alive Link to Nucleotide Sequence:NM_001164525.1Link to Protein Sequence:NP_001157997.1Re-query CCDS DB by Nucleotide ID:NM_001164525Re-query CCDS DB by Protein ID:NP_001157997Link to BLAST:NP_001157997.1

Chromosomal Locations for CCDS 48443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171419072 171419135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171419338 171419460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171419938 171420100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171420191 171420242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGCTTCGGCTTGCAGTTCTGCGTCACAGTCACACAAGTGCGGCTGCAGGAACCATGGCTGGAGTGCCTA
CAGTCTCCTTCTCTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCC
AGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTGTCTGAATTGGAAATCGCCTTG
AACATGGACCCAGCTGCTTTTCAGACTCTGTACTGTGCTGAGAAGCCAAAGCTAGAAGACAAGAATCTTA
TTTTCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGG
GGCTCGGAACTATGCCGGGGCCTATAAAGAGTGGCTGGAGAAACAGGGCTAG

Translation (133 aa):
MLRLAVLRHSHTSAAAGTMAGVPTVSFSELRSLVASGRARLFDVRSPEEAAAGTIPGALNIPVSELEIAL
NMDPAAFQTLYCAEKPKLEDKNLIFFCQMGRRGLQATQLAQGLGYTGARNYAGAYKEWLEKQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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