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Report for CCDS48652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48652.1 Public Mus musculus 10 Zfp938 23 108 98 CCDS HistoryNCBI Gene:237411Re-query CCDS DB by CCDS ID:48652.1Re-query CCDS DB by GeneID:237411See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041264.14 ENSMUSP00000047110.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041264.14Link to Ensembl Protein Viewer:ENSMUSP00000047110.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041264Re-query CCDS DB by Protein ID:ENSMUSP00000047110
Original member Current member NCBI NM_001105557.2 NP_001099027.2 Accepted alive Link to Nucleotide Sequence:NM_001105557.2Link to Protein Sequence:NP_001099027.2Re-query CCDS DB by Nucleotide ID:NM_001105557Re-query CCDS DB by Protein ID:NP_001099027Link to BLAST:NP_001099027.2

Chromosomal Locations for CCDS 48652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 82225045 82226593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82227531 82227591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82227799 82227925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82241171 82241173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGGATGCAGTGACTTTTATGGATGTGCATGTGAACTTCTCTCAGGAAGAGTGGGCTTTACTGGATCCTT
CTCAGAAGAGTCTCTACAAAGATGTCATGCTGGAAACCTACTGGAACCTTACTTGTATAGGCTATGATTG
GGAAGACAACAATAGTGAAGAATGTTGTCAAAGTTCTAGAAGACATGGAAGGTATTTCAACTCTTCTCAA
TATAGTACATATAAAGCAAAGGGCTATGGAAAGAAGCAGTGCACCTCTCTCTTTCCCAGAACAATTAGAA
GATATGTAGTCATCCCCACTATGAGAAGACATGGTGAATGTGATATAAGTTTACAAGTAAATGGTTTTCC
AGCTTCAATGGGAATTCATCAAAATACTCCCATTGGAGAAAAGCCTTATGAATACAAGGAGTATGGAAAA
TCTCCTGTCCGTCCTGGTTTACTTTGCATATGTAGTGTGACTCACACTATAGGAAAATGTTATGAATGCG
ATCAGTGTGGTAAAGATCTCAGTTCTTCTTTTTCTCTTCAAAGGTGTAAAATAAGTCATGTAGGAAAAGA
GCATGATGGATGTGAGCCAAGCAGTAAAAGTTTTAACTATCACAGGTATCTTCAAATACAGAACACAACC
TACAATGAAGAGTATCTCTATGATTATATTCAATGTGATAAGGCCTCTTTACAATTACACCAAAGAACTA
GTTCCACAATAACATCCTATGATTATAATGAAGGAGATAAAGACATTACATTTCACAGTAATCATCAGAT
ATGTAGGATGAATACTAGAGACACAAGGTATGAATATCATCAATGTGGTAAAACCTTTGCATGTCCTAAT
TACCTTCAAATACATGAAAGAATTCATACTAGAAAGAAACCCTATGAATGTAATCAGTGTGGTAAATTTT
TTGCATATAAAAGTCATTTTCACAAGCATCAAAGAACTCACACTGGTGAGAAACCCTATGAATGCAGTCA
GTGTGGTAAAGCCTTTGCATGTAATGGTAATCTTCAAATACATGAGAGAATTCATACTGGTGAGCAACCC
TATAAGTGTCATCAATGTGGGAAAGCCTTTGCATATAGCAATAGTCTTCACAAGCATGAAAGAACGCACA
CTGGAGAGAAACCCTATGAATGTAATCATTGTGGTAAAGCCTTTACATGTCACAGTACCCGGCAAATACA
TGAAAGAATTCATACTGGAGAGAAACCATATAAATGCAGTCAATGTGGTAAAACCTTTGCACGTAACAGC
CATGTTAAAATGCATGAAAGAATTCATACTGGAGAGAAACCCTATAAATGCAATCAATGTGGTAAAGCCT
TTGCATATCACAGTCATCTTCAAAGGCATGAAAGGATTCATACTGGAGAGAAGCCTTATGAATGTAATCA
ATGTGGTAAAGCCTTTGCATATCGCAGTAGTCTTAGACTACATGAAACAAGTCATACTGGAGAGAAACCT
TATGAATGTAACCAATGTGGTAAAACCTTTGCCTGTTCCAGCTATCTTCAAATACATGAAAGAATTCATA
CTGGAGAGAAACCCTTTCAATGTAAGCATTGTAGTAAAACCTTTTCATATCGCAGTAGTCTTCACATGCA
TGAAAAAAATCATACTGGAGAGAAACTCTTTGAATGTAAGAAATGTGGTATATCCTTTGCACATCTTGGT
ACCCTTCAAAAGCATGAAAAAAAGCATACAGACAAAGAAGAAAATTCCCCTGAAGGATAG

Translation (579 aa):
MDAVTFMDVHVNFSQEEWALLDPSQKSLYKDVMLETYWNLTCIGYDWEDNNSEECCQSSRRHGRYFNSSQ
YSTYKAKGYGKKQCTSLFPRTIRRYVVIPTMRRHGECDISLQVNGFPASMGIHQNTPIGEKPYEYKEYGK
SPVRPGLLCICSVTHTIGKCYECDQCGKDLSSSFSLQRCKISHVGKEHDGCEPSSKSFNYHRYLQIQNTT
YNEEYLYDYIQCDKASLQLHQRTSSTITSYDYNEGDKDITFHSNHQICRMNTRDTRYEYHQCGKTFACPN
YLQIHERIHTRKKPYECNQCGKFFAYKSHFHKHQRTHTGEKPYECSQCGKAFACNGNLQIHERIHTGEQP
YKCHQCGKAFAYSNSLHKHERTHTGEKPYECNHCGKAFTCHSTRQIHERIHTGEKPYKCSQCGKTFARNS
HVKMHERIHTGEKPYKCNQCGKAFAYHSHLQRHERIHTGEKPYECNQCGKAFAYRSSLRLHETSHTGEKP
YECNQCGKTFACSSYLQIHERIHTGEKPFQCKHCSKTFSYRSSLHMHEKNHTGEKLFECKKCGISFAHLG
TLQKHEKKHTDKEENSPEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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