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Report for CCDS48897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48897.1 Public Mus musculus 11 Plxdc1 23 108 98 CCDS HistoryNCBI Gene:72324Re-query CCDS DB by CCDS ID:48897.1Re-query CCDS DB by GeneID:72324See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107565.2 ENSMUSP00000103191.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107565.2Link to Ensembl Protein Viewer:ENSMUSP00000103191.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107565Re-query CCDS DB by Protein ID:ENSMUSP00000103191
Original member Current member NCBI NM_001163608.1 NP_001157080.1 Accepted alive Link to Nucleotide Sequence:NM_001163608.1Link to Protein Sequence:NP_001157080.1Re-query CCDS DB by Nucleotide ID:NM_001163608Re-query CCDS DB by Protein ID:NP_001157080Link to BLAST:NP_001157080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157080.1 507 Q91ZV7-2 507 100% 0 0

Chromosomal Locations for CCDS 48897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97924488 97924607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97925813 97925973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97928434 97928469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97932207 97932339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97933975 97934035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97938530 97938611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97940813 97940908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97953883 97953982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97954751 97954869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97955401 97955523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97956099 97956168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97956423 97956587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97978503 97978681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97986238 97986316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGCGAGCTCAGCTCTGGTTGCTGCAGTTGCTGCTACTCCGCGGGGCCGCGCGCGCGCTCAGTCCCGCAA
CACCCGCAGGTCACAATGAAGGTCAAGACTCTGCATGGACTGCCAAGAGGACCAGGCAAGGCTGGAGTCG
GAGACCCCGAGAGAGCCCCGCGCAGGTGTTGAAGCCAGGCAAGACCCAGCTAAGCCAGGACTTGGGTGGG
GGCTCCCTGGCCATCGACACACTTCCGGACAACAGGACTCGGGTGGTGGCTCTGTCTCTGTCCCCGCAGG
AGGACAACCATAACTACTACGTGTCCCGTGTCTACGGCCCTGGTGAGAAACAAAGCCAGGATCTGTGGGT
GGACCTGGCTGTGGCCAACCGGAGTCATGTGAAGATCCACAGGATCCTCTCCAGTTCTCACCGACAGGCT
TCAAGAGTGGTCTTGTCCTTTGATTTCCCTTTCTATGGGCATCCTCTGCGGCAGATCACCATAGCAACCG
GAGGCTTCATCTTCATGGGGGACATGCTCCACCGGATGCTCACAGCTACGCAGTATGTGGCACCCCTGAT
GGCCAACTTCAACCCCGGCTACTCTGACAACTCCACGGTTGCTTACTTTGACAATGGGACCGTTTTTGTG
GTTCAGTGGGATCATGTTTACCTCCAGGACCGGGAGGACAGGGGCAGCTTCACCTTCCAGGCGGCCCTAC
ACCGAGATGGCCGCATTGTCTTCGGCTACAAAGAGATCCCCATGGCTGTCCTGGATATCAGCTCTGCCCA
GCACCCTGTCAAGGCAGGCCTGTCCGACGCTTTCATGATTCTCAATTCATCCCCAGAGGTGCCAGCGTCT
CAGAGACGGACCATTTTCGAATACCACCGTGTGGAACTGGACTCCAGCAAGATCACCACCACCTCGGCCG
TGGAGTTCACCCCGTTGCCAACCTGCCTCCAGCATCAGAGTTGCGACACCTGCGTGTCCTCGAATCTAAC
CTTCAACTGCAGCTGGTGCCATGTCCTGCAGAGGTGTTCCAGTGGCTTTGACCGATACCGCCAAGAATGG
CTGACCTACGGCTGTGCCCAGGAGGCAGAAGGCAAGACATGCGAGGACTTCCAGGATGATAGCCACTACT
CAGCCTCCCCTGACAGCTCCTTCAGCCCCTTTAATGGCGACTCCACTACCTCTTCCTCCCTCTTCATTGA
CAGCCTCACCACAGAAGATGACACCAAGTTGAATCCCTACGCAGAAGGAGACGGCCTTCCGGACCACTCA
TCTCCGAAGTCCAAGGGTCCTCCCGTGCACCTGGGCACCATCGTGGGTATCGTGCTTGCTGTACTCCTGG
TAGCGGCCATCATCCTGGCTGGGATTTACATCAGTGGCCACCCTAATTCCAATGCTGCACTCTTCTTCAT
CGAGCGGAGACCTCACCACTGGCCAGCCATGAAGTTCCATAACCACCCCAACCACTCTACCTACACCGAG
GTAGAGCCCTCCGGGCACGAGAAGGAAGGCTTCGTGGAGGCCGAGCAGTGCTGA

Translation (507 aa):
MRAQLWLLQLLLLRGAARALSPATPAGHNEGQDSAWTAKRTRQGWSRRPRESPAQVLKPGKTQLSQDLGG
GSLAIDTLPDNRTRVVALSLSPQEDNHNYYVSRVYGPGEKQSQDLWVDLAVANRSHVKIHRILSSSHRQA
SRVVLSFDFPFYGHPLRQITIATGGFIFMGDMLHRMLTATQYVAPLMANFNPGYSDNSTVAYFDNGTVFV
VQWDHVYLQDREDRGSFTFQAALHRDGRIVFGYKEIPMAVLDISSAQHPVKAGLSDAFMILNSSPEVPAS
QRRTIFEYHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSNLTFNCSWCHVLQRCSSGFDRYRQEW
LTYGCAQEAEGKTCEDFQDDSHYSASPDSSFSPFNGDSTTSSSLFIDSLTTEDDTKLNPYAEGDGLPDHS
SPKSKGPPVHLGTIVGIVLAVLLVAAIILAGIYISGHPNSNAALFFIERRPHHWPAMKFHNHPNHSTYTE
VEPSGHEKEGFVEAEQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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