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Report for CCDS4941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4941.1 Public Homo sapiens 6 PAQR8 24 110 108 CCDS HistoryNCBI Gene:85315Re-query CCDS DB by CCDS ID:4941.1Re-query CCDS DB by GeneID:85315See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 4941.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360726.3 ENSP00000353953.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360726.3Link to Ensembl Protein Viewer:ENSP00000353953.3Re-query CCDS DB by Nucleotide ID:ENST00000360726Re-query CCDS DB by Protein ID:ENSP00000353953
Original member Current member EBI ENST00000442253.3 ENSP00000406197.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442253.3Link to Ensembl Protein Viewer:ENSP00000406197.2Re-query CCDS DB by Nucleotide ID:ENST00000442253Re-query CCDS DB by Protein ID:ENSP00000406197
Original member Current member NCBI NM_133367.5 NP_588608.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133367.5Link to Protein Sequence:NP_588608.1Re-query CCDS DB by Nucleotide ID:NM_133367Re-query CCDS DB by Protein ID:NP_588608Link to BLAST:NP_588608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_588608.1 354 Q8TEZ7 354 100% 0 0

Chromosomal Locations for CCDS 4941.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52403214 52404278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGACGACCGCCATCTTGGAGCGCCTGAGCACCCTGTCGGTCAGCGGGCAGCAGCTGCGCCGCCTGCCCA
AGATCCTGGAGGATGGGCTTCCCAAGATGCCTTGCACTGTCCCAGAAACGGATGTGCCCCAGCTCTTCCG
GGAGCCTTACATCCGCACCGGCTACCGCCCCACGGGGCACGAGTGGCGCTACTACTTCTTCAGCCTCTTT
CAGAAACACAACGAGGTGGTCAACGTCTGGACCCATTTACTGGCAGCCCTGGCCGTCCTCTTGCGATTCT
GGGCCTTTGCCGAGGCTGAGGCCTTGCCATGGGCGTCTACCCACTCCCTGCCTCTGCTCCTCTTCATCCT
GTCGTCAATCACTTACCTCACCTGCAGCCTTCTGGCCCACCTGCTGCAGTCCAAGTCAGAGCTCTCCCAC
TACACCTTCTACTTTGTGGACTATGTTGGCGTGAGCGTTTACCAATATGGCAGTGCTTTGGCTCATTTCT
TCTACAGCTCTGACCAGGCCTGGTATGACCGGTTCTGGCTTTTCTTCTTGCCAGCAGCTGCCTTCTGTGG
CTGGTTATCTTGTGCTGGCTGTTGCTATGCCAAATATCGTTACCGGAGGCCTTATCCAGTCATGAGGAAG
ATCTGTCAAGTGGTGCCAGCAGGTCTGGCTTTTATCCTAGACATCAGCCCTGTGGCACACCGTGTGGCGC
TCTGTCACCTGGCTGGCTGCCAGGAGCAAGCAGCCTGGTACCACACCCTCCAGATCCTCTTCTTCCTGGT
TAGCGCTTATTTCTTCTCCTGCCCCGTGCCTGAGAAGTACTTCCCGGGTTCCTGTGACATCGTGGGCCAT
GGGCATCAGATCTTCCATGCATTTCTGTCCATCTGTACGCTCTCCCAGCTGGAGGCCATCCTCCTGGACT
ACCAGGGGCGGCAGGAGATCTTCCTGCAGCGCCATGGACCCCTATCTGTCCACATGGCCTGCCTCTCCTT
CTTCTTCCTGGCTGCCTGCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAGTCAAGGCCAGACTGACC
AAGAAAGATTCCTGA

Translation (354 aa):
MTTAILERLSTLSVSGQQLRRLPKILEDGLPKMPCTVPETDVPQLFREPYIRTGYRPTGHEWRYYFFSLF
QKHNEVVNVWTHLLAALAVLLRFWAFAEAEALPWASTHSLPLLLFILSSITYLTCSLLAHLLQSKSELSH
YTFYFVDYVGVSVYQYGSALAHFFYSSDQAWYDRFWLFFLPAAAFCGWLSCAGCCYAKYRYRRPYPVMRK
ICQVVPAGLAFILDISPVAHRVALCHLAGCQEQAAWYHTLQILFFLVSAYFFSCPVPEKYFPGSCDIVGH
GHQIFHAFLSICTLSQLEAILLDYQGRQEIFLQRHGPLSVHMACLSFFFLAACSAATAALLRHKVKARLT
KKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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