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Report for CCDS49414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49414.1 Public Mus musculus 14 Mss51 23 108 98 CCDS HistoryNCBI Gene:74843Re-query CCDS DB by CCDS ID:49414.1Re-query CCDS DB by GeneID:74843See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022353.4 ENSMUSP00000022353.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022353.4Link to Ensembl Protein Viewer:ENSMUSP00000022353.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022353Re-query CCDS DB by Protein ID:ENSMUSP00000022353
Original member Current member NCBI NM_029104.1 NP_083380.1 Accepted alive Link to Nucleotide Sequence:NM_029104.1Link to Protein Sequence:NP_083380.1Re-query CCDS DB by Nucleotide ID:NM_029104Re-query CCDS DB by Protein ID:NP_083380Link to BLAST:NP_083380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083380.1 446 Q9D5Z5 446 100% 0 0

Chromosomal Locations for CCDS 49414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20483061 20483241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20483550 20483643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20484635 20485201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20486147 20486271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20487025 20487180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20487444 20487661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGCTCCTCGTTCACGGCGGCGAAAGCACAAGAAACCCCCACCAGTGATTCCCATGATTGAAATCCCAC
CCACAGAAGTGTCTCCAGTATCTCCAGCCCTCTCAAAACCTGGCCCTAGCATTGATGCACTTGGCTTCAT
TTCCTTGGACAATAATGTACCAGGTCTGTCCCAGTTGATCCTCCAAAAGCTGAACATGAAAAACTATGAA
GAATACAAGTTGGTGATAAATGGGGGAACCCCAGTATCAAGCTTTGGATTTCGATGTCAACAAGAAATGT
TCCAGAAGATGGAGGACACATTCAGATTCTGTGCTTATTGTAAAGTGCTCCCTCATGGCCTTTCCAATTG
CAAGGTTCTCCGGCACTGTAAGAGGTGCAGAAATGTCTATTACTGTGATACAGAGTGCCAGAGGTCAGAT
TGGCCAGCACATAGGAAGGTTTGTCGAGAGCTCCGTCTTGTGGCTGTAGATCGTGTCATGGAATGGCTTC
TGGTCACAGGTGATTTTGTCCTACCCTCAGGACCTTGGCCATGGCTACCTGAAGATATACAGAATTGGGA
TACCTGGTTTTCTATGAGGGGTTTACAGCTAGAATCTACATTGAATGCTCTTCTGGGTAGTCACTCTATG
ACCATGCTTTGGGCAAGTCTAGGAAGGCCACGGCCAGACCCAGATGTCTTGCATGGCTCTTTGAAGCGGT
TGATGACAGATGTTCTGTCACGGCCCTTGACCCTGGGCTTAGGGCTTCGGACTGTGGCAATAGATGTTGG
GAAGACTGGAGGAAGCACATTGCATGTGGTTGGTGCTTCCCACGTAGAGACATTTCTTATTCGTTCTGGA
GATTATGATGAGCTTGGCTACATGTTTCCTGAACACCTTGGCTTTCATGTGATCATGGTGGGTGTGGATG
TGGCTACTGACCTTTTACAGAGTTCTTCATCTTTATCCTTGGAGCCTGGAACAATTCAGCTTAGTGGCCA
CAGGGCCCTGTATCATGACTTCTGGGAGGAGCAAATAGAGACTGGGATTCTGGCCCATCCAGATTTGGTG
GCTGCATTCCATCCAGGTTTCCATGCCTCCCCAGGCTTGATGGAAGCTTGGTTACCCACCCTGCTGCTAC
TTCGTGACTATGAGATTCCAACATTGATTACTGTTTACAGCCAACAGGAACTGGAAGCCTCTTTGCAGAT
TCTGGTGAACTTGGATACACACATCATTGCTTGTGGAGCTAATCCTTTCGCATCCCTCAAACCAGAACAA
GTCTATTCTAATCCCAACAAGCAACCAGTATACAGCAGTGCCTACTACATCATGTTTCTTGGAAGTTCCC
CTGCCAATTAG

Translation (446 aa):
MAPRSRRRKHKKPPPVIPMIEIPPTEVSPVSPALSKPGPSIDALGFISLDNNVPGLSQLILQKLNMKNYE
EYKLVINGGTPVSSFGFRCQQEMFQKMEDTFRFCAYCKVLPHGLSNCKVLRHCKRCRNVYYCDTECQRSD
WPAHRKVCRELRLVAVDRVMEWLLVTGDFVLPSGPWPWLPEDIQNWDTWFSMRGLQLESTLNALLGSHSM
TMLWASLGRPRPDPDVLHGSLKRLMTDVLSRPLTLGLGLRTVAIDVGKTGGSTLHVVGASHVETFLIRSG
DYDELGYMFPEHLGFHVIMVGVDVATDLLQSSSSLSLEPGTIQLSGHRALYHDFWEEQIETGILAHPDLV
AAFHPGFHASPGLMEAWLPTLLLLRDYEIPTLITVYSQQELEASLQILVNLDTHIIACGANPFASLKPEQ
VYSNPNKQPVYSSAYYIMFLGSSPAN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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