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Report for CCDS4949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4949.1 Public Homo sapiens 6 CILK1 24 110 108 CCDS HistoryNCBI Gene:22858Re-query CCDS DB by CCDS ID:4949.1Re-query CCDS DB by GeneID:22858See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4949.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356971.3 ENSP00000349458.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356971.3Link to Ensembl Protein Viewer:ENSP00000349458.3Re-query CCDS DB by Nucleotide ID:ENST00000356971Re-query CCDS DB by Protein ID:ENSP00000349458
Original member Current member EBI ENST00000676107.1 ENSP00000501692.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000676107.1Link to Ensembl Protein Viewer:ENSP00000501692.1Re-query CCDS DB by Nucleotide ID:ENST00000676107Re-query CCDS DB by Protein ID:ENSP00000501692
Original member Current member NCBI NM_001375398.1 NP_001362327.1 Accepted alive Link to Nucleotide Sequence:NM_001375398.1Link to Protein Sequence:NP_001362327.1Re-query CCDS DB by Nucleotide ID:NM_001375398Re-query CCDS DB by Protein ID:NP_001362327Link to BLAST:NP_001362327.1
Original member Current member NCBI NM_001375399.1 NP_001362328.1 Accepted alive Link to Nucleotide Sequence:NM_001375399.1Link to Protein Sequence:NP_001362328.1Re-query CCDS DB by Nucleotide ID:NM_001375399Re-query CCDS DB by Protein ID:NP_001362328Link to BLAST:NP_001362328.1
Original member Current member NCBI NM_001375400.1 NP_001362329.1 Accepted alive Link to Nucleotide Sequence:NM_001375400.1Link to Protein Sequence:NP_001362329.1Re-query CCDS DB by Nucleotide ID:NM_001375400Re-query CCDS DB by Protein ID:NP_001362329Link to BLAST:NP_001362329.1
Original member Current member NCBI NM_001375401.1 NP_001362330.1 Accepted alive Link to Nucleotide Sequence:NM_001375401.1Link to Protein Sequence:NP_001362330.1Re-query CCDS DB by Nucleotide ID:NM_001375401Re-query CCDS DB by Protein ID:NP_001362330Link to BLAST:NP_001362330.1
Original member Current member NCBI NM_001375402.1 NP_001362331.1 Accepted alive Link to Nucleotide Sequence:NM_001375402.1Link to Protein Sequence:NP_001362331.1Re-query CCDS DB by Nucleotide ID:NM_001375402Re-query CCDS DB by Protein ID:NP_001362331Link to BLAST:NP_001362331.1
Original member Current member NCBI NM_014920.5 NP_055735.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014920.5Link to Protein Sequence:NP_055735.1Re-query CCDS DB by Nucleotide ID:NM_014920Re-query CCDS DB by Protein ID:NP_055735Link to BLAST:NP_055735.1
Original member Current member NCBI NM_016513.5 NP_057597.2 Accepted alive Link to Nucleotide Sequence:NM_016513.5Link to Protein Sequence:NP_057597.2Re-query CCDS DB by Nucleotide ID:NM_016513Re-query CCDS DB by Protein ID:NP_057597Link to BLAST:NP_057597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362327.1 632 Q9UPZ9-1 632 100% 0 0
NP_001362328.1 632 Q9UPZ9-1 632 100% 0 0
NP_001362329.1 632 Q9UPZ9-1 632 100% 0 0
NP_001362330.1 632 Q9UPZ9-1 632 100% 0 0
NP_001362331.1 632 Q9UPZ9-1 632 100% 0 0
NP_055735.1 632 Q9UPZ9-1 632 100% 0 0
NP_057597.2 632 Q9UPZ9-1 632 100% 0 0

Chromosomal Locations for CCDS 4949.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53005149 53005303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53006315 53006437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53009439 53009567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53011769 53011917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53012037 53012227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53013662 53013982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53016083 53016250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53018330 53018501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53019227 53019359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53031065 53031144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53032533 53032654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53037939 53037993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53041136 53041236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGAATAGATACACAACAATCAGGCAGCTCGGGGATGGAACCTACGGTTCCGTCCTGCTGGGAAGAAGCA
TTGAGTCTGGGGAGCTGATCGCTATTAAAAAAATGAAAAGAAAATTTTATTCCTGGGAGGAATGCATGAA
CCTTCGGGAGGTTAAGTCTTTAAAGAAGCTCAACCATGCCAATGTAGTCAAATTAAAAGAAGTTATCAGG
GAAAATGATCATCTTTATTTTATCTTCGAGTACATGAAGGAAAATCTTTACCAGCTCATTAAAGAGAGAA
ATAAGTTGTTTCCTGAGTCTGCTATAAGGAATATCATGTATCAGATATTACAAGGACTCGCATTTATTCA
CAAACACGGCTTCTTTCATCGAGACTTAAAGCCTGAGAACCTCCTCTGCATGGGACCAGAACTTGTGAAA
ATTGCAGACTTTGGTTTGGCCCGAGAAATACGATCAAAACCTCCATATACAGATTATGTATCTACCAGAT
GGTACAGGGCTCCAGAAGTACTCCTGAGGTCTACCAACTACAGCTCCCCCATTGACGTCTGGGCGGTGGG
CTGCATCATGGCAGAAGTTTACACCCTCAGGCCACTCTTCCCTGGAGCCAGTGAAATTGACACAATATTC
AAAATTTGCCAAGTGCTGGGGACACCAAAAAAGACTGACTGGCCTGAAGGCTATCAACTTTCAAGTGCAA
TGAACTTCCGTTGGCCACAGTGTGTACCCAATAACTTAAAGACCTTGATTCCCAATGCTAGCAGTGAAGC
AGTCCAGCTCCTGAGAGACATGCTTCAGTGGGATCCCAAGAAACGACCAACAGCTAGTCAGGCACTTCGA
TATCCTTACTTCCAAGTTGGACACCCACTAGGCAGCACCACACAAAACCTTCAGGATTCAGAAAAACCAC
AGAAAGGCATCCTGGAAAAGGCAGGCCCACCTCCTTATATTAAGCCAGTCCCACCTGCCCAGCCACCAGC
CAAGCCACACACACGAATTTCTTCACGACAGCATCAAGCCAGCCAGCCCCCTCTGCATCTCACGTACCCC
TACAAAGCAGAGGTCTCCAGGACAGATCACCCAAGCCATCTCCAGGAGGACAAGCCAAGCCCGTTGCTTT
TCCCATCCCTCCACAACAAGCATCCACAGTCGAAAATCACAGCTGGCCTGGAGCACAAAAATGGTGAGAT
AAAGCCAAAGAGTAGGAGAAGGTGGGGTCTTATTTCCAGGTCAACAAAGGATTCAGATGATTGGGCTGAC
TTGGATGACTTGGATTTCAGTCCATCCCTCAGCAGGATTGACCTGAAAAACAAGAAAAGACAGAGTGATG
ACACTCTCTGCAGGTTTGAGAGTGTTTTGGACCTGAAGCCCTCTGAGCCTGTGGGCACAGGAAACAGTGC
CCCCACCCAGACGTCATATCAGCGGCGAGACACGCCCACCCTGAGATCTGCAGCCAAGCAGCACTATTTG
AAGCACTCTCGATACTTGCCTGGGATCAGTATAAGAAATGGCATACTCTCGAATCCAGGCAAGGAATTTA
TTCCACCTAATCCATGGTCTAGTTCTGGCTTGTCTGGAAAATCTTCAGGGACAATGTCAGTAATCAGCAA
AGTAAATTCAGTTGGTTCCAGCTCTACAAGTTCTAGTGGACTGACTGGAAACTATGTCCCTTCCTTTCTG
AAAAAAGAAATCGGTTCTGCTATGCAGAGGGTACACCTAGCACCTATTCCAGACCCTTCCCCTGGTTATT
CCTCCCTGAAGGCCATGAGACCTCATCCTGGGCGACCATTCTTCCACACCCAGCCTAGAAGCACTCCTGG
GTTGATACCACGGCCTCCAGCCGCCCAGCCAGTGCATGGCCGGACAGACTGGGCTTCCAAGTACGCATCT
CGGCGATGA

Translation (632 aa):
MNRYTTIRQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEECMNLREVKSLKKLNHANVVKLKEVIR
ENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVK
IADFGLAREIRSKPPYTDYVSTRWYRAPEVLLRSTNYSSPIDVWAVGCIMAEVYTLRPLFPGASEIDTIF
KICQVLGTPKKTDWPEGYQLSSAMNFRWPQCVPNNLKTLIPNASSEAVQLLRDMLQWDPKKRPTASQALR
YPYFQVGHPLGSTTQNLQDSEKPQKGILEKAGPPPYIKPVPPAQPPAKPHTRISSRQHQASQPPLHLTYP
YKAEVSRTDHPSHLQEDKPSPLLFPSLHNKHPQSKITAGLEHKNGEIKPKSRRRWGLISRSTKDSDDWAD
LDDLDFSPSLSRIDLKNKKRQSDDTLCRFESVLDLKPSEPVGTGNSAPTQTSYQRRDTPTLRSAAKQHYL
KHSRYLPGISIRNGILSNPGKEFIPPNPWSSSGLSGKSSGTMSVISKVNSVGSSSTSSSGLTGNYVPSFL
KKEIGSAMQRVHLAPIPDPSPGYSSLKAMRPHPGRPFFHTQPRSTPGLIPRPPAAQPVHGRTDWASKYAS
RR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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